Literature DB >> 11895381

Neutral evolution in spatially continuous populations.

Nick H Barton1, Frantz Depaulis, Alison M Etheridge.   

Abstract

We introduce a general recursion for the probability of identity in state of two individuals sampled from a population subject to mutation, migration, and random drift in a two-dimensional continuum. The recursion allows for the interactions induced by density-dependent regulation of the population, which are inevitable in a continuous population. We give explicit series expansions for large neighbourhood size and for low mutation rates respectively and investigate the accuracy of the classical Malécot formula for these general models. When neighbourhood size is small, this formula does not give the identity even over large scales. However, for large neighbourhood size, it is an accurate approximation which summarises the local population structure in terms of three quantities: the effective dispersal rate, sigma(e); the effective population density, rho(e); and a local scale, kappa, at which local interactions become significant. The results are illustrated by simulations.

Mesh:

Year:  2002        PMID: 11895381     DOI: 10.1006/tpbi.2001.1557

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN: 0040-5809            Impact factor:   1.570


  28 in total

1.  Influence of spatial and temporal heterogeneities on the estimation of demographic parameters in a continuous population using individual microsatellite data.

Authors:  Raphael Leblois; François Rousset; Arnaud Estoup
Journal:  Genetics       Date:  2004-02       Impact factor: 4.562

2.  Genetic demixing and evolution in linear stepping stone models.

Authors:  K S Korolev; Mikkel Avlund; Oskar Hallatschek; David R Nelson
Journal:  Rev Mod Phys       Date:  2010-06-01       Impact factor: 54.494

3.  A quantitative test of population genetics using spatiogenetic patterns in bacterial colonies.

Authors:  Kirill S Korolev; João B Xavier; David R Nelson; Kevin R Foster
Journal:  Am Nat       Date:  2011-08-19       Impact factor: 3.926

4.  Estimating Barriers to Gene Flow from Distorted Isolation-by-Distance Patterns.

Authors:  Harald Ringbauer; Alexander Kolesnikov; David L Field; Nicholas H Barton
Journal:  Genetics       Date:  2018-01-08       Impact factor: 4.562

5.  A separation-of-timescales approach to the coalescent in a continuous population.

Authors:  Jon F Wilkins
Journal:  Genetics       Date:  2004-12       Impact factor: 4.562

6.  Stepping-stone spatial structure causes slow decay of linkage disequilibrium and shifts the site frequency spectrum.

Authors:  Arkendra De; Richard Durrett
Journal:  Genetics       Date:  2007-04-03       Impact factor: 4.562

7.  On the choice of genetic distance in spatial-genetic studies.

Authors:  Paul Fearnhead
Journal:  Genetics       Date:  2007-07-29       Impact factor: 4.562

8.  Genetic drift widens the expected cline but narrows the expected cline width.

Authors:  Jitka Polechová; Nick Barton
Journal:  Genetics       Date:  2011-07-29       Impact factor: 4.562

9.  The Spatial Mixing of Genomes in Secondary Contact Zones.

Authors:  Alisa Sedghifar; Yaniv Brandvain; Peter Ralph; Graham Coop
Journal:  Genetics       Date:  2015-07-22       Impact factor: 4.562

10.  Likelihood-based inference in isolation-by-distance models using the spatial distribution of low-frequency alleles.

Authors:  John Novembre; Montgomery Slatkin
Journal:  Evolution       Date:  2009-07-16       Impact factor: 3.694

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