Literature DB >> 11893058

Template-directed ligation: from DNA towards different versatile templates.

J C Leitzel1, D G Lynn.   

Abstract

A systematic approach evaluating template-directed ligation reactions has now resulted in a simple outline for a two-stage replication cycle. This cycle builds on an efficient method for reading the information encoded in DNA into an amplified translation product. It is further demonstrated that the translation product strand is capable of catalyzing the synthesis of the original DNA strand. We propose that this cycle represents just one of many possible solutions; other chemical ligation or polymerization reactions could be accommodated with different templates. In that context, a new template, derived by modest changes to the DNA backbone, has been developed and has been shown to hybridize under reaction conditions different than those accessible to DNA. Therefore, the conceptual groundwork has been laid for extending this approach to encoding and reading stored information in molecules other than the natural biopolymers at the densities found in biology.

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Year:  2001        PMID: 11893058     DOI: 10.1002/1528-0691(2001)1:1<53::AID-TCR8>3.0.CO;2-N

Source DB:  PubMed          Journal:  Chem Rec        ISSN: 1528-0691            Impact factor:   6.771


  8 in total

1.  Intercalation as a means to suppress cyclization and promote polymerization of base-pairing oligonucleotides in a prebiotic world.

Authors:  Eric D Horowitz; Aaron E Engelhart; Michael C Chen; Kaycee A Quarles; Michael W Smith; David G Lynn; Nicholas V Hud
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-08       Impact factor: 11.205

Review 2.  Learning from nature - novel synthetic biology approaches for biomaterial design.

Authors:  Anton V Bryksin; Ashley C Brown; Michael M Baksh; M G Finn; Thomas H Barker
Journal:  Acta Biomater       Date:  2014-01-24       Impact factor: 8.947

3.  Templated synthesis of nylon nucleic acids and characterization by nuclease digestion.

Authors:  Yu Liu; Risheng Wang; Liang Ding; Roujie Sha; Nadrian C Seeman; James W Canary
Journal:  Chem Sci       Date:  2012-03-08       Impact factor: 9.825

4.  Universal sequence replication, reversible polymerization and early functional biopolymers: a model for the initiation of prebiotic sequence evolution.

Authors:  Sara Imari Walker; Martha A Grover; Nicholas V Hud
Journal:  PLoS One       Date:  2012-04-06       Impact factor: 3.240

5.  Design, preparation, and selection of DNA-encoded dynamic libraries.

Authors:  Gang Li; Wenlu Zheng; Zitian Chen; Yu Zhou; Yu Liu; Junrui Yang; Yanyi Huang; Xiaoyu Li
Journal:  Chem Sci       Date:  2015-09-11       Impact factor: 9.825

6.  An in vitro translation, selection and amplification system for peptide nucleic acids.

Authors:  Yevgeny Brudno; Michael E Birnbaum; Ralph E Kleiner; David R Liu
Journal:  Nat Chem Biol       Date:  2009-12-27       Impact factor: 15.040

Review 7.  Recent progress toward the templated synthesis and directed evolution of sequence-defined synthetic polymers.

Authors:  Yevgeny Brudno; David R Liu
Journal:  Chem Biol       Date:  2009-03-27

8.  Enzyme-free translation of DNA into sequence-defined synthetic polymers structurally unrelated to nucleic acids.

Authors:  Jia Niu; Ryan Hili; David R Liu
Journal:  Nat Chem       Date:  2013-03-03       Impact factor: 24.427

  8 in total

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