Literature DB >> 11884148

Amino acid determinants of beta-hairpin conformation in erythropoeitin receptor agonist peptides derived from a phage display library.

Nicholas J Skelton1, Stephen Russell, Frederic de Sauvage, Andrea G Cochran.   

Abstract

Display of peptide libraries on filamentous phage has led to the identification of peptides of the form X(2-5)CX(2)GPXTWXCX(2-5) (where X is a variable residue) that bind to the extra-cellular portion of the erythropoietin receptor (EPO-R). These peptides adopt beta-hairpin conformations when co-crystallized with EPO-R. Solution NMR studies reveal that the peptide is conformationally heterogeneous in the absence of receptor due to cis-trans isomerization about the Gly-Pro peptide bond. Replacement of the conserved threonine residue with glycine at the turn i+3 position produces a stable beta-hairpin conformation in solution, although this peptide no longer has activity in an EPO-R-dependent cell proliferation assay. A truncated form of the EPO-R-binding peptide (containing the i+3 glycine residue) also forms a highly populated, monomeric beta-hairpin. In contrast, phage-derived peptide antagonists of insulin-like growth factor binding protein 1 (IGFBP-1) have a high level of sequence identity with the truncated EPO-R peptide (eight of 12 residues) yet adopt a turn-alpha-helix conformation in solution. Peptides containing all possible pairwise amino acid substitutions between the EPO-R and IGFBP-1 peptides have been analyzed to assess the degree to which the non-conserved residues stabilize the hairpin or helix conformation. All four residues present in the original sequence are required for maximum population of either the beta-hairpin or alpha-helix conformation, although some substitutions have a more dominant effect. The results demonstrate that, within a given sequence, the observed conformation can be dictated by a small subset of the residues (in this case four out of 12). Copyright 2002 Elsevier Science Ltd.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 11884148     DOI: 10.1006/jmbi.2002.5410

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  5 in total

Review 1.  Combinatorial chemistry of beta-hairpins.

Authors:  M Teresa Pastor; Enrique Pérez-Payá
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

2.  β-Sheet 13C structuring shifts appear only at the H-bonded sites of hairpins.

Authors:  Irene Shu; James M Stewart; Michele Scian; Brandon L Kier; Niels H Andersen
Journal:  J Am Chem Soc       Date:  2011-01-07       Impact factor: 15.419

3.  Clustering of disulfide-rich peptides provides scaffolds for hit discovery by phage display: application to interleukin-23.

Authors:  David T Barkan; Xiao-Li Cheng; Herodion Celino; Tran T Tran; Ashok Bhandari; Charles S Craik; Andrej Sali; Mark L Smythe
Journal:  BMC Bioinformatics       Date:  2016-11-23       Impact factor: 3.169

Review 4.  Small and Simple, yet Sturdy: Conformationally Constrained Peptides with Remarkable Properties.

Authors:  Krištof Bozovičar; Tomaž Bratkovič
Journal:  Int J Mol Sci       Date:  2021-02-05       Impact factor: 5.923

5.  Prediction of structural stability of short beta-hairpin peptides by molecular dynamics and knowledge-based potentials.

Authors:  Karin Noy; Nir Kalisman; Chen Keasar
Journal:  BMC Struct Biol       Date:  2008-05-29
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.