Literature DB >> 33562633

Small and Simple, yet Sturdy: Conformationally Constrained Peptides with Remarkable Properties.

Krištof Bozovičar1, Tomaž Bratkovič1.   

Abstract

The sheer size and vast chemical space (i.e., diverse repertoire and spatial distribution of functional groups) underlie peptides' ability to engage in specific interactions with targets of various structures. However, the inherent flexibility of the peptide chain negatively affects binding affinity and metabolic stability, thereby severely limiting the use of peptides as medicines. Imposing conformational constraints to the peptide chain offers to solve these problems but typically requires laborious structure optimization. Alternatively, libraries of constrained peptides with randomized modules can be screened for specific functions. Here, we present the properties of conformationally constrained peptides and review rigidification chemistries/strategies, as well as synthetic and enzymatic methods of producing macrocyclic peptides. Furthermore, we discuss the in vitro molecular evolution methods for the development of constrained peptides with pre-defined functions. Finally, we briefly present applications of selected constrained peptides to illustrate their exceptional properties as drug candidates, molecular recognition probes, and minimalist catalysts.

Entities:  

Keywords:  constrained peptides; crosslinking; enzymatic cyclization; hairpin loop; macrocycles; stapling

Year:  2021        PMID: 33562633      PMCID: PMC7915549          DOI: 10.3390/ijms22041611

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  104 in total

1.  Protein ligand design: from phage display to synthetic protein epitope mimetics in human antibody Fc-binding peptidomimetics.

Authors:  Ricardo L A Dias; Rudi Fasan; Kerstin Moehle; Annabelle Renard; Daniel Obrecht; John A Robinson
Journal:  J Am Chem Soc       Date:  2006-03-01       Impact factor: 15.419

2.  Sortase A-catalyzed peptide cyclization for the synthesis of macrocyclic peptides and glycopeptides.

Authors:  Zhimeng Wu; Xueqing Guo; Zhongwu Guo
Journal:  Chem Commun (Camb)       Date:  2011-07-08       Impact factor: 6.222

Review 3.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

4.  Discovery of Peptide Antibiotics Composed of d-Amino Acids.

Authors:  Emel Adaligil; Kalyani Patil; Marissa Rodenstein; Krishna Kumar
Journal:  ACS Chem Biol       Date:  2019-06-21       Impact factor: 5.100

5.  Peptidomimetic antibiotics target outer-membrane biogenesis in Pseudomonas aeruginosa.

Authors:  Nityakalyani Srinivas; Peter Jetter; Bernhard J Ueberbacher; Martina Werneburg; Katja Zerbe; Jessica Steinmann; Benjamin Van der Meijden; Francesca Bernardini; Alexander Lederer; Ricardo L A Dias; Pauline E Misson; Heiko Henze; Jürg Zumbrunn; Frank O Gombert; Daniel Obrecht; Peter Hunziker; Stefan Schauer; Urs Ziegler; Andres Käch; Leo Eberl; Kathrin Riedel; Steven J DeMarco; John A Robinson
Journal:  Science       Date:  2010-02-19       Impact factor: 47.728

6.  Development of a pharmacophore model for the catecholamine release-inhibitory peptide catestatin: virtual screening and functional testing identify novel small molecule therapeutics of hypertension.

Authors:  Igor F Tsigelny; Valentina L Kouznetsova; Nilima Biswas; Sushil K Mahata; Daniel T O'Connor
Journal:  Bioorg Med Chem       Date:  2013-07-17       Impact factor: 3.641

7.  Phage-encoded combinatorial chemical libraries based on bicyclic peptides.

Authors:  Christian Heinis; Trevor Rutherford; Stephan Freund; Greg Winter
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

8.  Expression of thioredoxin random peptide libraries on the Escherichia coli cell surface as functional fusions to flagellin: a system designed for exploring protein-protein interactions.

Authors:  Z Lu; K S Murray; V Van Cleave; E R LaVallie; M L Stahl; J M McCoy
Journal:  Biotechnology (N Y)       Date:  1995-04

Review 9.  Stapled Peptides Inhibitors: A New Window for Target Drug Discovery.

Authors:  Ameena M Ali; Jack Atmaj; Niels Van Oosterwijk; Matthew R Groves; Alexander Dömling
Journal:  Comput Struct Biotechnol J       Date:  2019-02-19       Impact factor: 7.271

Review 10.  Evolving a Peptide: Library Platforms and Diversification Strategies.

Authors:  Krištof Bozovičar; Tomaž Bratkovič
Journal:  Int J Mol Sci       Date:  2019-12-27       Impact factor: 5.923

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  3 in total

1.  Peptide-Antibody Fusions Engineered by Phage Display Exhibit an Ultrapotent and Broad Neutralization of SARS-CoV-2 Variants.

Authors:  Jonathan M Labriola; Shane Miersch; Gang Chen; Chao Chen; Alevtina Pavlenco; Reza Saberianfar; Francesca Caccuri; Alberto Zani; Nitin Sharma; Annie Feng; Daisy W Leung; Arnaldo Caruso; Giuseppe Novelli; Gaya K Amarasinghe; Sachdev S Sidhu
Journal:  ACS Chem Biol       Date:  2022-06-22       Impact factor: 4.634

Review 2.  A story of peptides, lipophilicity and chromatography - back and forth in time.

Authors:  Vanessa Erckes; Christian Steuer
Journal:  RSC Med Chem       Date:  2022-03-22

3.  X-ray Crystallographic Structure of α-Helical Peptide Stabilized by Hydrocarbon Stapling at i,i + 1 Positions.

Authors:  Yui Makura; Atsushi Ueda; Takuma Kato; Akihiro Iyoshi; Mei Higuchi; Mitsunobu Doi; Masakazu Tanaka
Journal:  Int J Mol Sci       Date:  2021-05-19       Impact factor: 5.923

  3 in total

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