Literature DB >> 11878992

An alternative method for pucker determination in carbohydrates from residual dipolar couplings: a solution NMR study of the fructofuranosyl ring of sucrose.

Darón I Freedberg1.   

Abstract

A simple solution NMR method is presented for pucker determination of five-membered rings using only residual dipolar couplings obtained in a single liquid crystalline medium, DMPC/DHPC bicelles (DMPC = dimyristoylphosphatidylcholine; DHPC = dihexanoylphosphatidylcholine). The method was applied to determine the pucker of the fructofuranosyl ring of sucrose. The results indicate a fructofuranosyl pucker phase in the 20 degrees - 70 degrees range. The pucker phases are in agreement with those from previous NMR and optical spectroscopic studies and, importantly, do not rely on empirically parametrized Karplus curves. Furthermore, the analysis implies more than one stable pucker phase and rapid ring interconversion in this range. The present results suggest that using residual dipolar couplings alone can reveal multiple conformations present in solution. Hence, when a sufficient number of residual dipolar coupling constants is measured, the outcome is a robust, reliable, and independent route for determining carbohydrate and nucleic acid structure by NMR spectroscopy.

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Year:  2002        PMID: 11878992     DOI: 10.1021/ja010981v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  Switched-angle spinning applied to bicelles containing phospholipid-associated peptides.

Authors:  Giorgia Zandomeneghi; Philip T F Williamson; Andreas Hunkeler; Beat H Meier
Journal:  J Biomol NMR       Date:  2003-02       Impact factor: 2.835

2.  J-Spectroscopy in the presence of residual dipolar couplings: determination of one-bond coupling constants and scalable resolution.

Authors:  Julien Furrer; Michael John; Horst Kessler; Burkhard Luy
Journal:  J Biomol NMR       Date:  2007-01-19       Impact factor: 2.835

3.  Synthesis and O-Glycosidic Linkage Conformational Analysis of 13C-Labeled Oligosaccharide Fragments of an Antifreeze Glycolipid.

Authors:  Wenhui Zhang; Reagan Meredith; Mi-Kyung Yoon; Xiaocong Wang; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  J Org Chem       Date:  2019-01-29       Impact factor: 4.354

Review 4.  Predicting the Structures of Glycans, Glycoproteins, and Their Complexes.

Authors:  Robert J Woods
Journal:  Chem Rev       Date:  2018-08-09       Impact factor: 60.622

5.  Sucrose in aqueous solution revisited, Part 1: molecular dynamics simulations and direct and indirect dipolar coupling analysis.

Authors:  Junchao Xia; David A Case
Journal:  Biopolymers       Date:  2011-12-20       Impact factor: 2.505

6.  Conformational Populations of β-(1→4) O-Glycosidic Linkages Using Redundant NMR J-Couplings and Circular Statistics.

Authors:  Wenhui Zhang; Toby Turney; Reagan Meredith; Qingfeng Pan; Luke Sernau; Xiaocong Wang; Xiaosong Hu; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  J Phys Chem B       Date:  2017-03-30       Impact factor: 2.991

7.  CHARMM additive all-atom force field for glycosidic linkages in carbohydrates involving furanoses.

Authors:  E Prabhu Raman; Olgun Guvench; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2010-10-14       Impact factor: 2.991

8.  NMR experiments for the measurement of proton-proton and carbon-carbon residual dipolar couplings in uniformly labelled oligosaccharides.

Authors:  Manuel Martin-Pastor; Angeles Canales-Mayordomo; Jesús Jiménez-Barbero
Journal:  J Biomol NMR       Date:  2003-08       Impact factor: 2.835

  8 in total

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