Literature DB >> 11872506

Widespread distribution in polar oceans of a 16S rRNA gene sequence with affinity to Nitrosospira-like ammonia-oxidizing bacteria.

James T Hollibaugh1, Nasreen Bano, Hugh W Ducklow.   

Abstract

We analyzed the phylogenetic compositions of ammonia-oxidizing bacteria of the beta subclass of Proteobacteria from 42 Southern Ocean samples. We found a Nitrosospira-like 16S rRNA gene sequence in all 20 samples that yielded PCR products (8 of 30 samples from the Ross Sea and 12 of 12 samples from the Palmer Peninsula). We also found this sequence in Arctic Ocean samples, indicating a transpolar, if not global, distribution; however, slight differences between Arctic and Antarctic sequences may be evidence of polar endemism.

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Year:  2002        PMID： 11872506      PMCID： PMC123743          DOI： 10.1128/AEM.68.3.1478-1484.2002

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  28 in total

1.  Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences.

Authors:  A G Speksnijder; G A Kowalchuk; S De Jong; E Kline; J R Stephen; H J Laanbroek
Journal:  Appl Environ Microbiol       Date:  2001-01       Impact factor: 4.792

2.  Diversity and distribution of DNA sequences with affinity to ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in the Arctic Ocean.

Authors:  N Bano; J T Hollibaugh
Journal:  Appl Environ Microbiol       Date:  2000-05       Impact factor: 4.792

3.  Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis.

Authors:  M J Ferris; D M Ward
Journal:  Appl Environ Microbiol       Date:  1997-04       Impact factor: 4.792

4.  Polymerase chain reaction reveals cloning artefacts.

Authors:  S Pääbo; A C Wilson
Journal:  Nature       Date:  1988-08-04       Impact factor: 49.962

5.  Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.

Authors:  J Brosius; M L Palmer; P J Kennedy; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

6.  Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria.

Authors:  A Teske; E Alm; J M Regan; S Toze; B E Rittmann; D A Stahl
Journal:  J Bacteriol       Date:  1994-11       Impact factor: 3.490

7.  Nitrification and Denitrification: Probing the Nitrogen Cycle in Aquatic Environments

Authors: 
Journal:  Microb Ecol       Date:  1996-11       Impact factor: 4.552

8.  Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica.

Authors:  A E Murray; C M Preston; R Massana; L T Taylor; A Blakis; K Wu; E F DeLong
Journal:  Appl Environ Microbiol       Date:  1998-07       Impact factor: 4.792

9.  A qualitative evaluation of the published oligonucleotides specific for the 16S rRNA gene sequences of the ammonia-oxidizing bacteria.

Authors:  J B Utåker; I F Nes
Journal:  Syst Appl Microbiol       Date:  1998-03       Impact factor: 4.022

10.  The Ribosomal Database Project.

Authors:  B L Maidak; N Larsen; M J McCaughey; R Overbeek; G J Olsen; K Fogel; J Blandy; C R Woese
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971
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  18 in total

1.  Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment.

Authors:  John P Bowman; Robert D McCuaig
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

2.  Differences between betaproteobacterial ammonia-oxidizing communities in marine sediments and those in overlying water.

Authors:  Thomas E Freitag; James I Prosser
Journal:  Appl Environ Microbiol       Date:  2004-06       Impact factor: 4.792

3.  Flow sorting of marine bacterioplankton after fluorescence in situ hybridization.

Authors:  Raju Sekar; Bernhard M Fuchs; Rudolf Amann; Jakob Pernthaler
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

4.  Relationship of temporal and spatial variabilities of ammonia-oxidizing bacteria to nitrification rates in Monterey Bay, California.

Authors:  G D O'Mullan; B B Ward
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

Review 5.  Fate of heterotrophic microbes in pelagic habitats: focus on populations.

Authors:  Jakob Pernthaler; Rudolf Amann
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

6.  Fluorophore-labeled primers improve the sensitivity, versatility, and normalization of denaturing gradient gel electrophoresis.

Authors:  Josh D Neufeld; William W Mohn
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

7.  Evaluation of PCR primer selectivity and phylogenetic specificity by using amplification of 16S rRNA genes from betaproteobacterial ammonia-oxidizing bacteria in environmental samples.

Authors:  Pilar Junier; Ok-Sun Kim; Ora Hadas; Johannes F Imhoff; Karl-Paul Witzel
Journal:  Appl Environ Microbiol       Date:  2008-06-20       Impact factor: 4.792

Review 8.  The history of aerobic ammonia oxidizers: from the first discoveries to today.

Authors:  Maria Monteiro; Joana Séneca; Catarina Magalhães
Journal:  J Microbiol       Date:  2014-06-28       Impact factor: 3.422

9.  Niche specificity of ammonia-oxidizing archaeal and bacterial communities in a freshwater wetland receiving municipal wastewater in Daqing, Northeast China.

Authors:  Kwok-Ho Lee; Yong-Feng Wang; Hui Li; Ji-Dong Gu
Journal:  Ecotoxicology       Date:  2014-08-28       Impact factor: 2.823

Review 10.  Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment.

Authors:  Pilar Junier; Verónica Molina; Cristina Dorador; Ora Hadas; Ok-Sun Kim; Thomas Junier; Jean-Paul Witzel; Johannes F Imhoff
Journal:  Appl Microbiol Biotechnol       Date:  2010-01       Impact factor: 4.813
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