Literature DB >> 11872140

To 5D and beyond: quantitative fluorescence microscopy in the postgenomic era.

Paul D Andrews1, Ian S Harper, Jason R Swedlow.   

Abstract

Digital fluorescence microscopy is now a standard technology for assaying molecular localisation in cells and tissues. The choice of laser scanning (LSM) and wide-field microscopes (WFM) largely depends on the type of sample, with LSMs performing best on thick samples and WFMs performing best on thin ones. These systems are increasingly used to collect large multidimensional datasets. We propose a unified image structure that considers space, time, and fluorescence wavelength as integral parts of the image. Moreover, the application of fluorescence imaging to large-scale screening means that large datasets are now routinely acquired. We propose that analysis of these data requires querying tools based on relational databases and describe one such system.

Mesh:

Year:  2002        PMID: 11872140     DOI: 10.1034/j.1600-0854.2002.30105.x

Source DB:  PubMed          Journal:  Traffic        ISSN: 1398-9219            Impact factor:   6.215


  14 in total

1.  Informatics and quantitative analysis in biological imaging.

Authors:  Jason R Swedlow; Ilya Goldberg; Erik Brauner; Peter K Sorger
Journal:  Science       Date:  2003-04-04       Impact factor: 47.728

Review 2.  From quantitative microscopy to automated image understanding.

Authors:  Kai Huang; Robert F Murphy
Journal:  J Biomed Opt       Date:  2004 Sep-Oct       Impact factor: 3.170

Review 3.  Imaging molecular interactions in living cells.

Authors:  Richard N Day; Fred Schaufele
Journal:  Mol Endocrinol       Date:  2005-03-10

Review 4.  Quantitative imaging of protein interactions in the cell nucleus.

Authors:  Ty C Voss; Ignacio A Demarco; Richard N Day
Journal:  Biotechniques       Date:  2005-03       Impact factor: 1.993

5.  3D/4D functional imaging of tumor-associated proteolysis: impact of microenvironment.

Authors:  Kamiar Moin; Mansoureh Sameni; Bernadette C Victor; Jennifer M Rothberg; Raymond R Mattingly; Bonnie F Sloane
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

6.  Subcellular topography of neuronal Abeta peptide in APPxPS1 transgenic mice.

Authors:  Dominique Langui; Nadège Girardot; Khalid Hamid El Hachimi; Bernadette Allinquant; Véronique Blanchard; Laurent Pradier; Charles Duyckaerts
Journal:  Am J Pathol       Date:  2004-11       Impact factor: 4.307

7.  The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging.

Authors:  Ilya G Goldberg; Chris Allan; Jean-Marie Burel; Doug Creager; Andrea Falconi; Harry Hochheiser; Josiah Johnston; Jeff Mellen; Peter K Sorger; Jason R Swedlow
Journal:  Genome Biol       Date:  2005-05-03       Impact factor: 13.583

8.  Quantitative methods to analyze subnuclear protein organization in cell populations with varying degrees of protein expression.

Authors:  Ty C Voss; Ignacio A Demarco; Cynthia F Booker; Richard N Day
Journal:  J Biomed Opt       Date:  2005 Mar-Apr       Impact factor: 3.170

9.  Observing Mitotic Division and Dynamics in a Live Zebrafish Embryo.

Authors:  Stefanie M Percival; John M Parant
Journal:  J Vis Exp       Date:  2016-07-15       Impact factor: 1.355

10.  Optical protein sensor for detecting cancer markers in saliva.

Authors:  Winny Tan; Leyla Sabet; Yang Li; Tianwei Yu; Perry R Klokkevold; David T Wong; Chih-Ming Ho
Journal:  Biosens Bioelectron       Date:  2008-04-06       Impact factor: 10.618

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