Literature DB >> 11866588

An effective method for the discrimination of motional anisotropy and chemical exchange.

Julie M Kneller1, Min Lu, Clay Bracken.   

Abstract

Analysis of the ratio of transverse and longitudinal relaxation rates (R2/R1) is an approach commonly used for estimation of overall correlation time and identification of chemical exchange in biological macromolecules. However, this analysis fails to distinguish between chemical exchange and motional anisotropy. We describe a simple method for identifying chemical exchange and motional anisotropy using the product, R1R2. In the slow tumbling regime, the R1R2 product results in a constant value that is independent of overall correlation time and motional anisotropy. This analysis provides a simple method for rapidly estimating and dissociating the effects of motional anisotropy and chemical exchange in NMR heteronuclear spin relaxation data. We demonstrate the utility of the method with 15N relaxation data collected on the proteins E. coli ribonuclease H and the trimeric E. coli membrane associated lipoprotein lpp.

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Year:  2002        PMID: 11866588     DOI: 10.1021/ja017461k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  68 in total

1.  Identification of a PU.1-IRF4 protein interaction surface predicted by chemical exchange line broadening.

Authors:  Scott R McKercher; Christian R Lombardo; Andrey Bobkov; Xin Jia; Nuria Assa-Munt
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-07       Impact factor: 11.205

2.  The structure of phospholamban pentamer reveals a channel-like architecture in membranes.

Authors:  Kirill Oxenoid; James J Chou
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

Review 3.  Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution.

Authors:  Tatyana I Igumenova; Kendra King Frederick; A Joshua Wand
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

4.  Structure, interactions, and dynamics of the RING domain from human TRAF6.

Authors:  Pascal Mercier; Michael J Lewis; D Duong Hau; Linda F Saltibus; Wei Xiao; Leo Spyracopoulos
Journal:  Protein Sci       Date:  2007-02-27       Impact factor: 6.725

5.  Four-alpha-helix bundle with designed anesthetic binding pockets. Part I: structural and dynamical analyses.

Authors:  Dejian Ma; Nicole R Brandon; Tanxing Cui; Vasyl Bondarenko; Christian Canlas; Jonas S Johansson; Pei Tang; Yan Xu
Journal:  Biophys J       Date:  2008-02-29       Impact factor: 4.033

6.  Four-alpha-helix bundle with designed anesthetic binding pockets. Part II: halothane effects on structure and dynamics.

Authors:  Tanxing Cui; Vasyl Bondarenko; Dejian Ma; Christian Canlas; Nicole R Brandon; Jonas S Johansson; Yan Xu; Pei Tang
Journal:  Biophys J       Date:  2008-02-29       Impact factor: 4.033

7.  Comparing the structure and dynamics of phospholamban pentamer in its unphosphorylated and pseudo-phosphorylated states.

Authors:  Kirill Oxenoid; Amanda J Rice; James J Chou
Journal:  Protein Sci       Date:  2007-09       Impact factor: 6.725

8.  Using NMR to distinguish viscosity effects from nonspecific protein binding under crowded conditions.

Authors:  Conggang Li; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2009-02-04       Impact factor: 15.419

9.  Structural dynamics and topology of phosphorylated phospholamban homopentamer reveal its role in the regulation of calcium transport.

Authors:  Vitaly V Vostrikov; Kaustubh R Mote; Raffaello Verardi; Gianluigi Veglia
Journal:  Structure       Date:  2013-10-24       Impact factor: 5.006

10.  Ligand binding reduces conformational flexibility in the active site of tyrosine phosphatase related to biofilm formation A (TpbA) from Pseudomonasaeruginosa.

Authors:  Dorothy Koveal; Michael W Clarkson; Thomas K Wood; Rebecca Page; Wolfgang Peti
Journal:  J Mol Biol       Date:  2013-03-21       Impact factor: 5.469

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