Literature DB >> 11860208

Gene replacement by homologous recombination in plants.

Holger Puchta1.   

Abstract

After the elucidation of the sequence of the yeast genome a major effort was started to elucidate the biological function of all open reading frames of this organisms by targeted gene replacement via homologous recombination. The establishment of the complete sequence of the genome of Arabidopsis thaliana would principally allow a similar approach. However, over the past dozen years all attempts to establish an efficient gene targeting technique in flowering plants were in the end not successful. In contrast, in Physcomitrella patens an efficient gene targeting procedure has been set up, making the moss a valuable model system for plant molecular biologists. But also for flowering plants recently several new approaches--some of them based on the availability of the genomic sequence of Arabidopsis--were initiated that might finally result on the set up of a general applicable technique. Beside the production of hyper-recombinogenic plants either via expression or suppression of specific gene functions or via undirected mutagenesis, the application of chimeric oligonucleotides might result in major progress.

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Mesh:

Year:  2002        PMID: 11860208

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  65 in total

1.  Double-strand break-induced recombination between ectopic homologous sequences in somatic plant cells.

Authors:  H Puchta
Journal:  Genetics       Date:  1999-07       Impact factor: 4.562

Review 2.  Controlling transgene integration in plants.

Authors:  S Kumar; M Fladung
Journal:  Trends Plant Sci       Date:  2001-04       Impact factor: 18.313

3.  Gene therapy in plants.

Authors:  B Hohn; H Puchta
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

4.  Stimulation of homologous recombination in plants by expression of the bacterial resolvase ruvC.

Authors:  G Shalev; Y Sitrit; N Avivi-Ragolski; C Lichtenstein; A A Levy
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

5.  Targeted gene repair directed by the chimeric RNA/DNA oligonucleotide in a mammalian cell-free extract.

Authors:  A Cole-Strauss; H Gamper; W K Holloman; M Muñoz; N Cheng; E B Kmiec
Journal:  Nucleic Acids Res       Date:  1999-03-01       Impact factor: 16.971

6.  Targeted disruption in Arabidopsis.

Authors:  S A Kempin; S J Liljegren; L M Block; S D Rounsley; M F Yanofsky; E Lam
Journal:  Nature       Date:  1997-10-23       Impact factor: 49.962

7.  A targeted gene knockout in Drosophila.

Authors:  Y S Rong; K G Golic
Journal:  Genetics       Date:  2001-03       Impact factor: 4.562

Review 8.  Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae.

Authors:  F Pâques; J E Haber
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

9.  Nonreciprocal homologous recombination between Agrobacterium transferred DNA and a plant chromosomal locus.

Authors:  R Offringa; M E Franke-van Dijk; M J De Groot; P J van den Elzen; P J Hooykaas
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-01       Impact factor: 11.205

10.  Gene targeting and instability of Agrobacterium T-DNA loci in the plant genome.

Authors:  E Risseeuw; M E Franke-van Dijk; P J Hooykaas
Journal:  Plant J       Date:  1997-04       Impact factor: 6.417

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  35 in total

1.  Efficient repair of genomic double-strand breaks by homologous recombination between directly repeated sequences in the plant genome.

Authors:  Ralph Siebert; Holger Puchta
Journal:  Plant Cell       Date:  2002-05       Impact factor: 11.277

Review 2.  A tool for understanding homologous recombination in plants.

Authors:  A Hohe; R Reski
Journal:  Plant Cell Rep       Date:  2003-05-23       Impact factor: 4.570

3.  Modification of endogenous natural genes by gene targeting in rice and other higher plants.

Authors:  Shigeru Iida; Rie Terada
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

4.  Targeted mutagenesis using zinc-finger nucleases in Arabidopsis.

Authors:  Alan Lloyd; Christopher L Plaisier; Dana Carroll; Gary N Drews
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-26       Impact factor: 11.205

5.  Green light for gene targeting in plants.

Authors:  Holger Puchta; Barbara Hohn
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-16       Impact factor: 11.205

6.  Nontransgenic genome modification in plant cells.

Authors:  Ira Marton; Amir Zuker; Elena Shklarman; Vardit Zeevi; Andrey Tovkach; Suzy Roffe; Marianna Ovadis; Tzvi Tzfira; Alexander Vainstein
Journal:  Plant Physiol       Date:  2010-09-27       Impact factor: 8.340

7.  Analysis of the phytochrome gene family in Ceratodon purpureus by gene targeting reveals the primary phytochrome responsible for photo- and polarotropism.

Authors:  Franz Mittmann; Sven Dienstbach; Andrea Weisert; Christoph Forreiter
Journal:  Planta       Date:  2009-03-28       Impact factor: 4.116

8.  Targeted transgene integration in plant cells using designed zinc finger nucleases.

Authors:  Charles Q Cai; Yannick Doyon; W Michael Ainley; Jeffrey C Miller; Russell C Dekelver; Erica A Moehle; Jeremy M Rock; Ya-Li Lee; Robbi Garrison; Lisa Schulenberg; Ryan Blue; Andrew Worden; Lisa Baker; Farhoud Faraji; Lei Zhang; Michael C Holmes; Edward J Rebar; Trevor N Collingwood; Beth Rubin-Wilson; Philip D Gregory; Fyodor D Urnov; Joseph F Petolino
Journal:  Plant Mol Biol       Date:  2008-12-27       Impact factor: 4.076

9.  Nonhomologous end joining-mediated gene replacement in plant cells.

Authors:  Dan Michael Weinthal; Roslyn Ann Taylor; Tzvi Tzfira
Journal:  Plant Physiol       Date:  2013-03-18       Impact factor: 8.340

10.  Targeted site-directed mutagenesis of a heme oxygenase locus by gene replacement in the moss Ceratodon purpureus.

Authors:  Gerhard Brücker; Franz Mittmann; Elmar Hartmann; Tilman Lamparter
Journal:  Planta       Date:  2004-12-02       Impact factor: 4.116

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