Literature DB >> 11849132

Isolation of porcine expressed sequence tags for the construction of a first genomic transcript map of the skeletal muscle in pig.

R Davoli1, L Fontanesi, P Zambonelli, D Bigi, J Gellin, M Yerle, J Milc, S Braglia, V Cenci, M Cagnazzo, V Russo.   

Abstract

To identify genes with effects on meat quality and production traits we developed an adult porcine skeletal muscle cDNA library. After pre-screening this library with seven genes highly expressed in skeletal muscle, 385 non-hybridizing clones were sequenced from both ends to yield 510 expressed sequence tags (ESTs). Together with those ESTs previously generated from this library, we have produced 701 porcine skeletal muscle ESTs. These ESTs were grouped into 306 different cDNA species and compared with the human skeletal muscle transcriptional profiles obtained from different databases. Furthermore we mapped 107 of these cDNAs using a somatic cell hybrid panel with genes mapping over all the autosomes (except on chromosome 11) and on chromosome X. The mapping of these cDNAs contributed to the construction of a first genomic transcript map of the skeletal muscle tissue in pig.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 11849132     DOI: 10.1046/j.1365-2052.2002.00800.x

Source DB:  PubMed          Journal:  Anim Genet        ISSN: 0268-9146            Impact factor:   3.169


  21 in total

1.  EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human.

Authors:  Christopher K Tuggle; Jon A Green; Carolyn Fitzsimmons; Rami Woods; Randall S Prather; Sergei Malchenko; Bento M Soares; Tamara Kucaba; Keith Crouch; Christina Smith; Dylan Tack; Natalie Robinson; Brian O'Leary; Todd Scheetz; Thomas Casavant; Daniel Pomp; Brad J Edeal; Yuandan Zhang; Max F Rothschild; Kevin Garwood; William Beavis
Journal:  Mamm Genome       Date:  2003-08       Impact factor: 2.957

2.  Characterization of 298 ESTs from porcine back fat tissue and their assignment to the SSRH radiation hybrid map.

Authors:  Ayumi Mikawa; Hideaki Suzuki; Kohei Suzuki; Daisuke Toki; Hirohide Uenishi; Takashi Awata; Noriyuki Hamasima
Journal:  Mamm Genome       Date:  2004-04       Impact factor: 2.957

3.  Molecular characterization, expression analysis and association study with meat quality traits of porcine TTID gene.

Authors:  Jun Wang; Chang-Yan Deng; Yuan-Zhu Xiong; Bo Zuo
Journal:  Mol Biol Rep       Date:  2012-10-25       Impact factor: 2.316

4.  Porcine skeletal muscle differentially expressed gene ATP5B: molecular characterization, expression patterns, and association analysis with meat quality traits.

Authors:  Haixia Xu; Yongjie Xu; Xiaojuan Liang; Yanbo Wang; Fangfang Jin; Dengying Liu; Yun Ma; Hongyu Yuan; Xinqiang Song; Wenxian Zeng
Journal:  Mamm Genome       Date:  2013-02-19       Impact factor: 2.957

5.  Transcriptome expression profiles in prenatal pigs in relation to myogenesis.

Authors:  Marinus F W Te Pas; Agnes A W De Wit; Jan Priem; Massimo Cagnazzo; Roberta Davoli; Vincenzo Russo; Marco H Pool
Journal:  J Muscle Res Cell Motil       Date:  2005-07-01       Impact factor: 2.698

6.  Subcellular localization, expression patterns, SNPs and association analyses of the porcine HUMMLC2B gene.

Authors:  Huan L Wang; Heng Wang; Zheng M Zhu; Chen F Wang; Meng J Zhu; De L Mo; Shu L Yang; Kui Li
Journal:  Mol Genet Genomics       Date:  2006-06-27       Impact factor: 3.291

7.  Transcriptome analysis reveals that constant heat stress modifies the metabolism and structure of the porcine longissimus dorsi skeletal muscle.

Authors:  Yue Hao; Yuejin Feng; Peige Yang; Yanjun Cui; Jiru Liu; Chunhe Yang; Xianhong Gu
Journal:  Mol Genet Genomics       Date:  2016-08-25       Impact factor: 3.291

8.  Molecular characterization and expression analysis of NDUFS4 gene in m. longissimus dorsi of Laiwu pig (Sus scrofa).

Authors:  Qimei Chen; Yongqing Zeng; Hui Wang; Lun Yang; Yun Yang; Honglei Zhu; Yuan Shi; Wei Chen; Yanxia Hu
Journal:  Mol Biol Rep       Date:  2012-10-18       Impact factor: 2.316

9.  Association of eight EST-derived SNPs with carcass and meat quality traits in pigs.

Authors:  Xiong Tong; Zhe Zhang; Yiren Jiao; Jian Xu; Hongquyen Dang; Ye Chen; Zhiguo Jiang; Junli Duan; Hao Zhang; Jiaqi Li; Chong Wang
Journal:  J Appl Genet       Date:  2014-08-01       Impact factor: 3.240

10.  A robust linkage map of the porcine autosomes based on gene-associated SNPs.

Authors:  Rikke K K Vingborg; Vivi R Gregersen; Bujie Zhan; Frank Panitz; Anette Høj; Kirsten K Sørensen; Lone B Madsen; Knud Larsen; Henrik Hornshøj; Xuefei Wang; Christian Bendixen
Journal:  BMC Genomics       Date:  2009-03-27       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.