Literature DB >> 11841213

Three subunits contribute amino acids to the active site of tetrameric adenylosuccinate lyase: Lys268 and Glu275 are required.

Jennifer L Brosius1, Roberta F Colman.   

Abstract

Tetrameric adenylosuccinate lyase (ASL) of Bacillus subtilis catalyzes the cleavage of adenylosuccinate to form AMP and fumarate. We previously reported that two distinct subunits contribute residues to each active site, including the His68 and His89 from one and His141 from a second subunit [Brosius, J. L., and Colman, R. F. (2000) Biochemistry 39, 13336-13343]. Glu(275) is 2.8 A from His141 in the ASL crystal structure, and Lys268 is also in the active site region; Glu275 and Lys268 come from a third, distinct subunit. Using site-directed mutagenesis, we have replaced Lys268 by Arg, Gln, Glu, and Ala, with specific activities of the purified mutant enzymes being 0.055, 0.00069, 0.00028, and 0.0, respectively, compared to 1.56 units/mg for wild-type (WT) enzyme. Glu275 was substituted by Gln, Asp, Ala, and Arg; none of these homogeneous mutant enzymes has detectable activity. Circular dichroism and light scattering reveal that neither the secondary structure nor the oligomeric state of the Lys268 mutant enzymes has been perturbed. Native gel electrophoresis and circular dichroism indicate that the Glu275 mutant enzymes are tetramers, but their conformation is altered slightly. For K268R, the K(m)s for all substrates are similar to WT enzyme. Binding studies using [2-3H]-adenylosuccinate reveal that none of the Glu275 mutant enzymes, nor inactive K268A, can bind substrate. We propose that Lys268 participates in binding substrate and that Glu275 is essential for catalysis because of its interaction with His141. Incubation of H89Q with K268Q or E275Q leads to restoration of up to 16% WT activity, while incubation of H141Q with K268Q or E275Q results in 6% WT activity. These complementation studies provide the first functional evidence that a third subunit contributes residues to each intersubunit active site of ASL. Thus, adenylosuccinate lyase has four active sites per enzyme tetramer, each of which is formed from regions of three subunits.

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Year:  2002        PMID: 11841213     DOI: 10.1021/bi011998t

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  Functional evidence for active site location of tetrameric thymidylate synthase X at the interphase of three monomers.

Authors:  Damien Leduc; Sébastien Graziani; Gerard Lipowski; Christophe Marchand; Pierre Le Maréchal; Ursula Liebl; Hannu Myllykallio
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

2.  Structural and biochemical characterization of human adenylosuccinate lyase (ADSL) and the R303C ADSL deficiency-associated mutation.

Authors:  Stephen P Ray; Michelle K Deaton; Glenn C Capodagli; Lauren A F Calkins; Lucas Sawle; Kingshuk Ghosh; David Patterson; Scott D Pegan
Journal:  Biochemistry       Date:  2012-08-07       Impact factor: 3.162

3.  In vitro hybridization and separation of hybrids of human adenylosuccinate lyase from wild-type and disease-associated mutant enzymes.

Authors:  Lushanti De Zoysa Ariyananda; Christina Antonopoulos; Jenna Currier; Roberta F Colman
Journal:  Biochemistry       Date:  2011-02-03       Impact factor: 3.162

4.  Important roles of hydroxylic amino acid residues in the function of Bacillus subtilis adenylosuccinate lyase.

Authors:  Mark L Segall; Meghan A Cashman; Roberta F Colman
Journal:  Protein Sci       Date:  2007-03       Impact factor: 6.725

5.  Biochemical and biophysical analysis of five disease-associated human adenylosuccinate lyase mutants.

Authors:  Lushanti De Zoysa Ariyananda; Peychii Lee; Christina Antonopoulos; Roberta F Colman
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

6.  The characterization of mutant Bacillus subtilis adenylosuccinate lyases corresponding to severe human adenylosuccinate lyase deficiencies.

Authors:  Jennifer Brosius Palenchar; Jennifer M Crocco; Roberta F Colman
Journal:  Protein Sci       Date:  2003-08       Impact factor: 6.725

7.  Substrate and product complexes of Escherichia coli adenylosuccinate lyase provide new insights into the enzymatic mechanism.

Authors:  May Tsai; Jason Koo; Patrick Yip; Roberta F Colman; Mark L Segall; P Lynne Howell
Journal:  J Mol Biol       Date:  2007-05-04       Impact factor: 5.469

8.  Coenzyme M biosynthesis in bacteria involves phosphate elimination by a functionally distinct member of the aspartase/fumarase superfamily.

Authors:  Sarah E Partovi; Florence Mus; Andrew E Gutknecht; Hunter A Martinez; Brian P Tripet; Bernd Markus Lange; Jennifer L DuBois; John W Peters
Journal:  J Biol Chem       Date:  2018-02-06       Impact factor: 5.157

9.  The structure of phosphate-bound Escherichia coli adenylosuccinate lyase identifies His171 as a catalytic acid.

Authors:  Guennadi Kozlov; Long Nguyen; Jessica Pearsall; Kalle Gehring
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-08-20

10.  Effect of Asp69 and Arg310 on the pK of His68, a key catalytic residue of adenylosuccinate lyase.

Authors:  Sharmila Sivendran; Mark L Segall; Pumtiwitt C Rancy; Roberta F Colman
Journal:  Protein Sci       Date:  2007-06-28       Impact factor: 6.725

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