Literature DB >> 11839485

Evolutionary predictions of binding surfaces and interactions.

Olivier Lichtarge1, Mathew E Sowa.   

Abstract

Rapid progress in structural biology and whole-genome sequencing technology means that, for many protein families, structural and evolutionary information are readily available. Recent developments demonstrate how this information can be integrated to identify canonical determinants of protein structure and function. Among these determinants, those residues that are on protein surfaces are especially likely to form binding sites and are the logical choice for further mutational analysis and drug targeting.

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Year:  2002        PMID: 11839485     DOI: 10.1016/s0959-440x(02)00284-1

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  86 in total

1.  MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison.

Authors:  Angel R Ortiz; Charlie E M Strauss; Osvaldo Olmea
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

2.  From protein structure to biochemical function?

Authors:  Roman A Laskowski; James D Watson; Janet M Thornton
Journal:  J Struct Funct Genomics       Date:  2003

Review 3.  Accurate and scalable identification of functional sites by evolutionary tracing.

Authors:  Olivier Lichtarge; Hui Yao; David M Kristensen; Srinivasan Madabushi; Ivana Mihalek
Journal:  J Struct Funct Genomics       Date:  2003

4.  Docking and electron transfer studies between rubredoxin and rubredoxin:oxygen oxidoreductase.

Authors:  Bruno L Victor; João B Vicente; Rute Rodrigues; Solange Oliveira; Claudina Rodrigues-Pousada; Carlos Frazão; Cláudio M Gomes; Miguel Teixeira; Cláudio M Soares
Journal:  J Biol Inorg Chem       Date:  2003-02-15       Impact factor: 3.358

5.  Structure-based method for analyzing protein-protein interfaces.

Authors:  Ying Gao; Renxiao Wang; Luhua Lai
Journal:  J Mol Model       Date:  2003-11-22       Impact factor: 1.810

Review 6.  Structural genomics: computational methods for structure analysis.

Authors:  Sharon Goldsmith-Fischman; Barry Honig
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

7.  Asymmetric mutation rates at enzyme-inhibitor interfaces: implications for the protein-protein docking problem.

Authors:  James R Bradford; David R Westhead
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

8.  Prediction of functional sites by analysis of sequence and structure conservation.

Authors:  Anna R Panchenko; Fyodor Kondrashov; Stephen Bryant
Journal:  Protein Sci       Date:  2004-03-09       Impact factor: 6.725

9.  FamClash: a method for ranking the activity of engineered enzymes.

Authors:  Manish C Saraf; Alexander R Horswill; Stephen J Benkovic; Costas D Maranas
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-23       Impact factor: 11.205

10.  Solution structure of inhibitor-free human metalloelastase (MMP-12) indicates an internal conformational adjustment.

Authors:  Rajagopalan Bhaskaran; Mark O Palmier; Nusayba A Bagegni; Xiangyang Liang; Steven R Van Doren
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

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