Literature DB >> 11829494

Conservation of the T-cell receptor alpha/delta linkage in the teleost fish Tetraodon nigroviridis.

Cécile Fischer1, Laurence Bouneau, Catherine Ozouf-Costaz, Tatjana Crnogorac-Jurcevic, Jean Weissenbach, Alain Bernot.   

Abstract

T-cell specific receptors (TCR) are present in all groups] from the jawed vertebrates to the mammals. In teleosts, however, the genes encoding the gamma- and delta-chains have not yet been found, the alpha- and beta-chains have been characterized mainly at the expression level, and genomic organization of these loci remains largely unknown. Here we describe both the genomic organization of the TCR alpha/delta locus in Tetraodon nigroviridis and the transcription of TCRA and TCRD. The TCR alpha/delta locus consists of 13 V alpha/delta segments, a Calpha gene, and 12 Jalpha segments, followed by a Cdelta gene, two Jdelta segments, and several Ddelta segments. However, the genomic organization found in this teleost differs significantly from that which has been observed in mammals and birds: a common set of V segments is used to generate either an alpha- or a delta-chain by genomic inversion, and the size of the locus is small in this vertebrate.

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Year:  2002        PMID: 11829494     DOI: 10.1006/geno.2002.6688

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  20 in total

Review 1.  Recent insights into the transcriptional control of the Tcra/Tcrd locus by distant enhancers during the development of T-lymphocytes.

Authors:  Cristina Hernández-Munain
Journal:  Transcription       Date:  2015

2.  Identification and characterization of TCRγ and TCRδ chains in channel catfish, Ictalurus punctatus.

Authors:  Mohadetheh Moulana; Erin B Taylor; Eva-Stina Edholm; Sylvie M A Quiniou; Melanie Wilson; Eva Bengtén
Journal:  Immunogenetics       Date:  2014-08-17       Impact factor: 2.846

3.  The dynamic TCRδ: TCRδ chains in the amphibian Xenopus tropicalis utilize antibody-like V genes.

Authors:  Zuly E Parra; Yuko Ohta; Michael F Criscitiello; Martin F Flajnik; Robert D Miller
Journal:  Eur J Immunol       Date:  2010-08       Impact factor: 5.532

4.  Estimation of the extent of synteny between Tetraodon nigroviridis and Homo sapiens genomes.

Authors:  Alain Bernot; Jean Weissenbach
Journal:  J Mol Evol       Date:  2004-10       Impact factor: 2.395

5.  Characterization of the zebrafish T cell receptor beta locus.

Authors:  Nathan D Meeker; Alexandra C H Smith; J Kimble Frazer; Diana F Bradley; Lynnie A Rudner; Cynthia Love; Nikolaus S Trede
Journal:  Immunogenetics       Date:  2010-01-07       Impact factor: 2.846

Review 6.  Alphabeta versus gammadelta lineage choice at the first TCR-controlled checkpoint.

Authors:  Taras Kreslavsky; Michael Gleimer; Harald von Boehmer
Journal:  Curr Opin Immunol       Date:  2010-01-13       Impact factor: 7.486

7.  Genomic structure around joining segments and constant regions of swine T-cell receptor alpha/delta (TRA/TRD) locus.

Authors:  Hirohide Uenishi; Hideki Hiraiwa; Ryuji Yamamoto; Hiroshi Yasue; Yohtaroh Takagaki; Takashi Shiina; Eri Kikkawa; Hidetoshi Inoko; Takashi Awata
Journal:  Immunology       Date:  2003-08       Impact factor: 7.397

8.  Evolution of the variable gene segments and recombination signal sequences of the human T-cell receptor alpha/delta locus.

Authors:  Marsha R Haynes; Gillian E Wu
Journal:  Immunogenetics       Date:  2004-09-18       Impact factor: 2.846

9.  Genomic organization of the zebrafish (Danio rerio) T cell receptor alpha/delta locus and analysis of expressed products.

Authors:  Stacie L Seelye; Patricia L Chen; Thaddeus C Deiss; Michael F Criscitiello
Journal:  Immunogenetics       Date:  2016-01-26       Impact factor: 2.846

10.  An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis.

Authors:  Laurence Bouneau; Cécile Fischer; Catherine Ozouf-Costaz; Alexander Froschauer; Olivier Jaillon; Jean-Pierre Coutanceau; Cornelia Körting; Jean Weissenbach; Alain Bernot; Jean-Nicolas Volff
Journal:  Genome Res       Date:  2003-06-12       Impact factor: 9.043

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