Literature DB >> 11823244

Coexistence of two distinct copies of naphthalene degradation genes in Pseudomonas strains isolated from the western Mediterranean region.

Marcela Ferrero1, Enrique Llobet-Brossa, Jorge Lalucat, Elena García-Valdés, Ramón Rosselló-Mora, Rafael Bosch.   

Abstract

We analyzed the occurrence of the naphthalene degradation upper-pathway (nah) genes in the western Mediterranean region. The amplification, restriction, and sequence analysis of internal fragments for several nah genes (nahAc, nahB, nahC, and nahE) from naphthalene-degrading strains isolated from this geographical area proved the coexistence of two distinct sets of nah genes.

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Year:  2002        PMID： 11823244      PMCID： PMC126682          DOI： 10.1128/AEM.68.2.957-962.2002

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  21 in total

1.  The RDP (Ribosomal Database Project) continues.

Authors:  B L Maidak; J R Cole; T G Lilburn; C T Parker; P R Saxman; J M Stredwick; G M Garrity; B Li; G J Olsen; S Pramanik; T M Schmidt; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Nucleotide sequence of xylE from the TOL pDK1 plasmid and structural comparison with isofunctional catechol-2,3-dioxygenase genes from TOL, pWW0 and NAH7.

Authors:  R C Benjamin; J A Voss; D A Kunz
Journal:  J Bacteriol       Date:  1991-04       Impact factor: 3.490

3.  Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.

Authors:  M J Simon; T D Osslund; R Saunders; B D Ensley; S Suggs; A Harcourt; W C Suen; D L Cruden; D T Gibson; G J Zylstra
Journal:  Gene       Date:  1993-05-15       Impact factor: 3.688

4.  Plasmid gene organization: naphthalene/salicylate oxidation.

Authors:  K M Yen; I C Gunsalus
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

5.  Initial reactions in the oxidation of naphthalene by Pseudomonas putida.

Authors:  A M Jeffrey; H J Yeh; D M Jerina; T R Patel; J F Davey; D T Gibson
Journal:  Biochemistry       Date:  1975-02-11       Impact factor: 3.162

6.  Genetic characterization and evolutionary implications of a chromosomally encoded naphthalene-degradation upper pathway from Pseudomonas stutzeri AN10.

Authors:  R Bosch; E García-Valdés; E R Moore
Journal:  Gene       Date:  1999-08-05       Impact factor: 3.688

7.  Identification of the nahR gene product and nucleotide sequences required for its activation of the sal operon.

Authors:  M A Schell; P E Wender
Journal:  J Bacteriol       Date:  1986-04       Impact factor: 3.490

8.  Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids.

Authors:  S Harayama; M Rekik; A Wasserfallen; A Bairoch
Journal:  Mol Gen Genet       Date:  1987-12

9.  New naphthalene-degrading marine Pseudomonas strains.

Authors:  E García-Valdés; E Cozar; R Rotger; J Lalucat; J Ursing
Journal:  Appl Environ Microbiol       Date:  1988-10       Impact factor: 4.792

10.  Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolution.

Authors:  S Harayama; M Rekik
Journal:  Mol Gen Genet       Date:  1993-05
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  13 in total

1.  Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation.

Authors:  Sinéad M Ní Chadhain; R Sean Norman; Karen V Pesce; Jerome J Kukor; Gerben J Zylstra
Journal:  Appl Environ Microbiol       Date:  2006-06       Impact factor: 4.792

2.  A targeted real-time PCR assay for studying naphthalene degradation in the environment.

Authors:  Mari Nyyssönen; Reetta Piskonen; Merja Itävaara
Journal:  Microb Ecol       Date:  2006-09-30       Impact factor: 4.552

3.  Pseudomonas diversity in crude-oil-contaminated intertidal sand samples obtained after the Prestige oil spill.

Authors:  Magdalena Mulet; Zoyla David; Balbina Nogales; Rafael Bosch; Jorge Lalucat; Elena García-Valdés
Journal:  Appl Environ Microbiol       Date:  2010-12-03       Impact factor: 4.792

Review 4.  Recent advances in petroleum microbiology.

Authors:  Jonathan D Van Hamme; Ajay Singh; Owen P Ward
Journal:  Microbiol Mol Biol Rev       Date:  2003-12       Impact factor: 11.056

5.  Microbial characterization and hydrocarbon biodegradation potential of natural bilge waste microflora.

Authors:  N L Olivera; M G Commendatore; O Delgado; J L Esteves
Journal:  J Ind Microbiol Biotechnol       Date:  2003-08-01       Impact factor: 3.346

6.  Bacterial community dynamics during bioremediation of diesel oil-contaminated Antarctic soil.

Authors:  S Vázquez; B Nogales; L Ruberto; E Hernández; J Christie-Oleza; A Lo Balbo; R Bosch; J Lalucat; W Mac Cormack
Journal:  Microb Ecol       Date:  2008-08-07       Impact factor: 4.552

7.  Distribution of naphthalene dioxygenase genes in crude oil-contaminated soils.

Authors:  Yuyin Yang; Jie Wang; Jingqiu Liao; Shuguang Xie; Yi Huang
Journal:  Microb Ecol       Date:  2014-07-10       Impact factor: 4.552

8.  Microbial diversity in natural asphalts of the Rancho La Brea Tar Pits.

Authors:  Jong-Shik Kim; David E Crowley
Journal:  Appl Environ Microbiol       Date:  2007-04-06       Impact factor: 4.792

9.  Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation.

Authors:  Ashish Pathak; Ashvini Chauhan; Jochen Blom; Karl J Indest; Carina M Jung; Paul Stothard; Gopal Bera; Stefan J Green; Andrew Ogram
Journal:  PLoS One       Date:  2016-08-17       Impact factor: 3.240

10.  Novel aromatic ring-hydroxylating dioxygenase genes from coastal marine sediments of Patagonia.

Authors:  Mariana Lozada; Juan P Riva Mercadal; Leandro D Guerrero; Walter D Di Marzio; Marcela A Ferrero; Hebe M Dionisi
Journal:  BMC Microbiol       Date:  2008-03-25       Impact factor: 3.605
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