Literature DB >> 11810247

Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA.

Y Ogihara1, K Isono, T Kojima, A Endo, M Hanaoka, T Shiina, T Terachi, S Utsugi, M Murata, N Mori, S Takumi, K Ikeo, T Gojobori, R Murai, K Murai, Y Matsuoka, Y Ohnishi, H Tajiri, K Tsunewaki.   

Abstract

Structural features of the wheat plastome were clarified by comparison of the complete sequence of wheat chloroplast DNA with those of rice and maize chloroplast genomes. The wheat plastome consists of a 134,545-bp circular molecule with 20,703-bp inverted repeats and the same gene content as the rice and maize plastomes. However, some structural divergence was found even in the coding regions of genes. These alterations are due to illegitimate recombination between two short direct repeats and/or replication slippage. Overall comparison of chloroplast DNAs among the three cereals indicated the presence of some hot-spot regions for length mutations. Whereas the region with clustered tRNA genes and that downstream of rbcL showed divergence in a species-specific manner, the deletion patterns of ORFs in the inverted-repeat regions and the borders between the inverted repeats and the small single-copy region support the notion that wheat and rice are related more closely to each other than to maize.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11810247     DOI: 10.1007/s00438-001-0606-9

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  48 in total

1.  Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes.

Authors:  Shu-Miaw Chaw; Chien-Chang Chang; Hsin-Liang Chen; Wen-Hsiung Li
Journal:  J Mol Evol       Date:  2004-04       Impact factor: 2.395

2.  The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms.

Authors:  Nalapalli Samson; Michael G Bausher; Seung-Bum Lee; Robert K Jansen; Henry Daniell
Journal:  Plant Biotechnol J       Date:  2007-03       Impact factor: 9.803

3.  Complete sequencing and comparative analyses of the pepper (Capsicum annuum L.) plastome revealed high frequency of tandem repeats and large insertion/deletions on pepper plastome.

Authors:  Yeong Deuk Jo; Jongsun Park; Jungeun Kim; Wonho Song; Cheol-Goo Hur; Yong-Hwan Lee; Byoung-Cheorl Kang
Journal:  Plant Cell Rep       Date:  2010-10-27       Impact factor: 4.570

4.  The complete chloroplast genome of Coix lacryma-jobi and a comparative molecular evolutionary analysis of plastomes in cereals.

Authors:  Charles H Leseberg; Melvin R Duvall
Journal:  J Mol Evol       Date:  2009-09-24       Impact factor: 2.395

5.  Optimization and Comparative Analysis of Plant Organellar DNA Enrichment Methods Suitable for Next-generation Sequencing.

Authors:  Marisa E Miller; Katie L Liberatore; Shahryar F Kianian
Journal:  J Vis Exp       Date:  2017-07-28       Impact factor: 1.355

6.  Down the slippery slope: plastid genome evolution in Convolvulaceae.

Authors:  Sasa Stefanović; Richard G Olmstead
Journal:  J Mol Evol       Date:  2005-07-04       Impact factor: 2.395

7.  Variable presence of the inverted repeat and plastome stability in Erodium.

Authors:  John C Blazier; Robert K Jansen; Jeffrey P Mower; Madhu Govindu; Jin Zhang; Mao-Lun Weng; Tracey A Ruhlman
Journal:  Ann Bot       Date:  2016-04-28       Impact factor: 4.357

8.  The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence.

Authors:  Hwa-Jee Chung; Jong Duk Jung; Hyun-Woo Park; Joo-Hwan Kim; Hyun Wook Cha; Sung Ran Min; Won-Joong Jeong; Jang Ryol Liu
Journal:  Plant Cell Rep       Date:  2006-07-12       Impact factor: 4.570

9.  Structural analysis of chloroplast DNA in Prunus (Rosaceae): evolution, genetic diversity and unequal mutations.

Authors:  H Katayama; C Uematsu
Journal:  Theor Appl Genet       Date:  2005-09-02       Impact factor: 5.699

10.  Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes.

Authors:  Rosemarie C Haberle; H Matthew Fourcade; Jeffrey L Boore; Robert K Jansen
Journal:  J Mol Evol       Date:  2008-03-11       Impact factor: 2.395

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.