Literature DB >> 11800813

Interplay of nonlinearity and geometry in a DNA-related, Klein-Gordon model with long-range dipole-dipole interaction.

J F R Archilla1, P L Christiansen, Yu B Gaididei.   

Abstract

Most of the studies on mathematical models of DNA are limited to next neighbor interaction. However, the coupling between base pairs is thought to be caused by dipole interaction, and, when the DNA strand is bent, the distances between base pairs become shorter, therefore the interactions with distant base pairs have to be taken into account. In this paper we analyze the existence and stability of breathers, i.e., localized oscillations in a simple model of bent DNA with long-range dipole interaction. Breathers have been suggested as precursors of the denaturation bubble.

Entities:  

Year:  2001        PMID: 11800813     DOI: 10.1103/PhysRevE.65.016609

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Stationary solutions for a modified Peyrard-Bishop DNA model with up to third-neighbor interactions.

Authors:  Z Rapti
Journal:  Eur Phys J E Soft Matter       Date:  2010-06-17       Impact factor: 1.890

2.  The relevance of nonlinear stacking interactions in simple models of double-stranded DNA.

Authors:  Giuseppe Saccomandi; Ivonne Sgura
Journal:  J R Soc Interface       Date:  2006-10-22       Impact factor: 4.118

3.  Langevin dynamics of conformational transformations induced by the charge-curvature interaction.

Authors:  Yu B Gaididei; C Gorria; P L Christiansen
Journal:  J Biol Phys       Date:  2009-02-25       Impact factor: 1.365

  3 in total

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