Literature DB >> 11793247

The promise of a protist: the Dictyostelium genome project.

A Kuspa1, R Sucgang, G Shaulsky.   

Abstract

The genome of Dictyostelium discoideum is being sequenced by an international consortium and is scheduled for completion in the next few years. The sequence will accelerate research into a number of phenomena carried out by these versatile soil amoebae, providing insight into analogous processes that operate in a wide range of eukaryotes. These include the dynamic regulation of the cytoskeleton during chemotaxis, intercellular communication during multicellular development and the intracellular growth of bacterial pathogens. The current state of the genome project is summarized and the challenges of sequencing a genome with unusually low guanine and cytosine content and with a bimodal base composition distribution are discussed. The prospects for functional analyses at the genomic scale are also considered.

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Year:  2001        PMID: 11793247     DOI: 10.1007/s101420000033

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN: 1438-793X            Impact factor:   3.410


  7 in total

1.  Changing patterns of gene expression in dictyostelium prestalk cell subtypes recognized by in situ hybridization with genes from microarray analyses.

Authors:  Mineko Maeda; Haruyo Sakamoto; Negin Iranfar; Danny Fuller; Toshinari Maruo; Satoshi Ogihara; Takahiro Morio; Hideko Urushihara; Yoshimasa Tanaka; William F Loomis
Journal:  Eukaryot Cell       Date:  2003-06

2.  The generic genome browser: a building block for a model organism system database.

Authors:  Lincoln D Stein; Christopher Mungall; ShengQiang Shu; Michael Caudy; Marco Mangone; Allen Day; Elizabeth Nickerson; Jason E Stajich; Todd W Harris; Adrian Arva; Suzanna Lewis
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

3.  Novel non-coding RNAs in Dictyostelium discoideum and their expression during development.

Authors:  Anders Aspegren; Andrea Hinas; Pontus Larsson; Anders Larsson; Fredrik Söderbom
Journal:  Nucleic Acids Res       Date:  2004-08-27       Impact factor: 16.971

4.  Reevaluation of the predicted gene structure of Dictyostelium cystatin A3 (cpiC) by nucleotide sequence determination of its cDNA* and its phylogenetic position in the cystatin superfamily.

Authors:  Medhat S El-Halawany; Hideki Shibata; Kiyotaka Hitomi; Masatoshi Maki
Journal:  Mol Biol Rep       Date:  2005-12       Impact factor: 2.316

5.  Disruption of inositol biosynthesis through targeted mutagenesis in Dictyostelium discoideum: generation and characterization of inositol-auxotrophic mutants.

Authors:  Andreas Fischbach; Stephan Adelt; Alexander Müller; Günter Vogel
Journal:  Biochem J       Date:  2006-08-01       Impact factor: 3.857

Review 6.  Revamp a model-status and prospects of the Dictyostelium genome project.

Authors:  Ludwig Eichinger
Journal:  Curr Genet       Date:  2003-07-11       Impact factor: 3.886

7.  Analyses of cDNAs from growth and slug stages of Dictyostelium discoideum.

Authors:  Hideko Urushihara; Takahiro Morio; Tamao Saito; Yuji Kohara; Eiko Koriki; Hiroshi Ochiai; Mineko Maeda; Jeffrey G Williams; Ikuo Takeuchi; Yoshimasa Tanaka
Journal:  Nucleic Acids Res       Date:  2004-03-09       Impact factor: 16.971

  7 in total

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