Literature DB >> 11772022

Catalytic mapping of the vibriobactin biosynthetic enzyme VibF.

C Gary Marshall1, Nathan J Hillson, Christopher T Walsh.   

Abstract

The iron-chelating catechol siderophore vibriobactin of the pathogenic Vibrio cholerae is assembled by a four-subunit, ten-domain nonribosomal peptide synthetase system, VibE, VibB, VibH, and VibF, using 2,3-dihydroxybenzoate and L-threonine as precursors to two (dihydroxyphenyl)methyloxazolinyl groups in amide linkage on a norspermidine scaffold. We have utilized site-specific and domain-deletion mutagenesis to map the heterocyclization and primary and secondary amine acylation activities of the six-domain (Cy1-Cy2-A-C1-PCP-C2) VibF subunit. We have found that Cy2 is capable of and limited to the condensation (amide bond formation) step of the three-step heterocyclization process, while Cy1 is capable of and limited to the final processing (cyclization/dehydration) steps to the completed heterocycle. Additionally, we have observed that the C2 domain functions in both N(9) (primary amine) acylation and N(5) (secondary amine) acylation of the (dihydroxybenzoyl)norspermidine substrate, leaving no catalytic role for the C1 domain, a conclusion confirmed with the formation of vibriobactin in a C1-deficient system. Thus VibF is an NRPS with two domains, Cy1 and Cy2, that perform a function otherwise performed by one and with one domain, C2, that performs a function otherwise performed by two. While C2 appeared to tolerate uncyclized threonine in place of the usual heterocycle in primary amine acylation, it refused this replacement in the corresponding donor substrate in secondary amine acylation.

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Year:  2002        PMID: 11772022     DOI: 10.1021/bi011852u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  28 in total

Review 1.  Structure and noncanonical chemistry of nonribosomal peptide biosynthetic machinery.

Authors:  Heather L Condurso; Steven D Bruner
Journal:  Nat Prod Rep       Date:  2012-06-25       Impact factor: 13.423

2.  Probing intra- versus interchain kinetic preferences of L-Thr acylation on dimeric VibF with mass spectrometry.

Authors:  Leslie M Hicks; Carl J Balibar; Christopher T Walsh; Neil L Kelleher; Nathan J Hillson
Journal:  Biophys J       Date:  2006-06-30       Impact factor: 4.033

3.  Analyses of MbtB, MbtE, and MbtF suggest revisions to the mycobactin biosynthesis pathway in Mycobacterium tuberculosis.

Authors:  Matthew D McMahon; Jason S Rush; Michael G Thomas
Journal:  J Bacteriol       Date:  2012-03-23       Impact factor: 3.490

Review 4.  Explorations of catalytic domains in non-ribosomal peptide synthetase enzymology.

Authors:  Gene H Hur; Christopher R Vickery; Michael D Burkart
Journal:  Nat Prod Rep       Date:  2012-07-17       Impact factor: 13.423

5.  Vibrio cholerae VciB Mediates Iron Reduction.

Authors:  Eric D Peng; Shelley M Payne
Journal:  J Bacteriol       Date:  2017-05-25       Impact factor: 3.490

Review 6.  Biosynthesis of depsipeptides, or Depsi: The peptides with varied generations.

Authors:  Diego A Alonzo; T Martin Schmeing
Journal:  Protein Sci       Date:  2020-11-02       Impact factor: 6.725

7.  Structural elements of an NRPS cyclization domain and its intermodule docking domain.

Authors:  Daniel P Dowling; Yan Kung; Anna K Croft; Koli Taghizadeh; Wendy L Kelly; Christopher T Walsh; Catherine L Drennan
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-17       Impact factor: 11.205

8.  A nonribosomal peptide synthetase with a novel domain organization is essential for siderophore biosynthesis in Vibrio anguillarum.

Authors:  Manuela Di Lorenzo; Sophie Poppelaars; Michiel Stork; Maho Nagasawa; Marcelo E Tolmasky; Jorge H Crosa
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

Review 9.  Vibrio Iron Transport: Evolutionary Adaptation to Life in Multiple Environments.

Authors:  Shelley M Payne; Alexandra R Mey; Elizabeth E Wyckoff
Journal:  Microbiol Mol Biol Rev       Date:  2015-12-09       Impact factor: 11.056

10.  Identification and localization of the gene cluster encoding biosynthesis of the antitumor macrolactam leinamycin in Streptomyces atroolivaceus S-140.

Authors:  Yi-Qiang Cheng; Gong-Li Tang; Ben Shen
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

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