Literature DB >> 11752774

Gd-HPDO3A, a complex to obtain high-phasing-power heavy-atom derivatives for SAD and MAD experiments: results with tetragonal hen egg-white lysozyme.

Eric Girard1, Laurent Chantalat, Jean Vicat, Richard Kahn.   

Abstract

A neutral gadolinium complex, Gd-HPDO3A, is shown to be a good candidate to use to obtain heavy-atom derivatives and solve macromolecular structures using anomalous dispersion. Tetragonal crystals of a gadolinium derivative of hen egg-white lysozyme were obtained by co-crystallization using different concentrations of the complex. Diffraction data from three derivative crystals (100, 50 and 10 mM) were collected to a resolution of 1.7 A using Cu Kalpha radiation from a rotating anode. Two strong binding sites of the gadolinium complex to the protein were located from the gadolinium anomalous signal in both the 100 and 50 mM derivatives. A single site is occupied in the 10 mM derivative. Phasing using the anomalous signal at a single wavelength (SAD method) leads to an electron-density map of high quality. The structure of the 100 mM derivative has been refined. Two molecules of the gadolinium complex are close together. Both molecules are located close to tryptophan residues. Four chloride ions were found. The exceptional quality of the SAD electron-density map, only enhanced by solvent flattening, suggests that single-wavelength anomalous scattering with the Gd-HPDO3A complex may be sufficient to solve protein structures of high molecular weight by synchrotron-radiation experiments, if not by laboratory experiments.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11752774     DOI: 10.1107/s0907444901016444

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  16 in total

1.  De novo protein crystal structure determination from X-ray free-electron laser data.

Authors:  Thomas R M Barends; Lutz Foucar; Sabine Botha; R Bruce Doak; Robert L Shoeman; Karol Nass; Jason E Koglin; Garth J Williams; Sébastien Boutet; Marc Messerschmidt; Ilme Schlichting
Journal:  Nature       Date:  2013-11-24       Impact factor: 49.962

2.  Protein recognition of macrocycles: binding of anti-HIV metallocyclams to lysozyme.

Authors:  Tina M Hunter; Iain W McNae; Xiangyang Liang; Juraj Bella; Simon Parsons; Malcolm D Walkinshaw; Peter J Sadler
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-08       Impact factor: 11.205

3.  Automated NMR Assignment and Protein Structure Determination using Sparse Dipolar Coupling Constraints.

Authors:  Bruce R Donald; Jeffrey Martin
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-08-01       Impact factor: 9.795

4.  An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments.

Authors:  Christopher James Langmead; Bruce Randall Donald
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

5.  Using lanthanoid complexes to phase large macromolecular assemblies.

Authors:  Romain Talon; Richard Kahn; M Asunción Durá; Olivier Maury; Frédéric M D Vellieux; Bruno Franzetti; Eric Girard
Journal:  J Synchrotron Radiat       Date:  2010-11-05       Impact factor: 2.616

6.  Get phases from arsenic anomalous scattering: de novo SAD phasing of two protein structures crystallized in cacodylate buffer.

Authors:  Xiang Liu; Heng Zhang; Xiao-Jun Wang; Lan-Fen Li; Xiao-Dong Su
Journal:  PLoS One       Date:  2011-09-02       Impact factor: 3.240

7.  Structural insights of non-canonical U*U pair and Hoogsteen interaction probed with Se atom.

Authors:  Jia Sheng; Jianhua Gan; Alexei S Soares; Jozef Salon; Zhen Huang
Journal:  Nucleic Acids Res       Date:  2013-09-05       Impact factor: 16.971

8.  Experimental phasing for structure determination using membrane-protein crystals grown by the lipid cubic phase method.

Authors:  Dianfan Li; Valerie E Pye; Martin Caffrey
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01

9.  Towards phasing using high X-ray intensity.

Authors:  Lorenzo Galli; Sang-Kil Son; Thomas R M Barends; Thomas A White; Anton Barty; Sabine Botha; Sébastien Boutet; Carl Caleman; R Bruce Doak; Max H Nanao; Karol Nass; Robert L Shoeman; Nicusor Timneanu; Robin Santra; Ilme Schlichting; Henry N Chapman
Journal:  IUCrJ       Date:  2015-09-30       Impact factor: 4.769

10.  Solving the RNA polymerase I structural puzzle.

Authors:  María Moreno-Morcillo; Nicholas M I Taylor; Tim Gruene; Pierre Legrand; Umar J Rashid; Federico M Ruiz; Ulrich Steuerwald; Christoph W Müller; Carlos Fernández-Tornero
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-27
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.