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Literature DB >> 11752294

HERVd: database of human endogenous retroviruses.

Jan Paces¹, Adam Pavlícek, Václav Paces.

Abstract

The human endogenous retroviruses database (HERVd) is maintained at the Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, and is accessible via the World Wide Web at http://herv.img.cas.cz. The HERVd provides complex information on and analysis of retroviral elements found in the human genome. It can be used for searches of individual HERV families, identification of HERV parts, graphical output of HERV structures, comparison of HERVs and identification of retrovirus integration sites.

Entities: Species

Mesh：

Year: 2002 PMID： 11752294 PMCID： PMC99133 DOI： 10.1093/nar/30.1.205

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

15 in total

Review 1. The pathogenic potential of endogenous retroviruses: facts and fantasies.

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Journal: Trends Microbiol Date: 1999-09 Impact factor: 17.079

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Journal: Nature Date: 2001-02-15 Impact factor: 49.962

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9. The sequence of the human genome.

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Journal: Science Date: 2001-02-16 Impact factor: 47.728

Review 10. Endogenous retroviruses in the human genome sequence.

Authors: D J Griffiths
Journal: Genome Biol Date: 2001-06-05 Impact factor: 13.583

33 in total

1. Processed pseudogenes of human endogenous retroviruses generated by LINEs: their integration, stability, and distribution.

Authors: Adam Pavlícek; Jan Paces; Daniel Elleder; Jirí Hejnar
Journal: Genome Res Date: 2002-03 Impact factor: 9.043

2. HERVd: the Human Endogenous RetroViruses Database: update.

Authors: Jan Paces; Adam Pavlícek; Radek Zika; Vladimir V Kapitonov; Jerzy Jurka; Václav Paces
Journal: Nucleic Acids Res Date: 2004-01-01 Impact factor: 16.971

Review 3. The evolution, distribution and diversity of endogenous retroviruses.

Authors: Robert Gifford; Michael Tristem
Journal: Virus Genes Date: 2003-05 Impact factor: 2.332

4. Long-term reinfection of the human genome by endogenous retroviruses.

Authors: Robert Belshaw; Vini Pereira; Aris Katzourakis; Gillian Talbot; Jan Paces; Austin Burt; Michael Tristem
Journal: Proc Natl Acad Sci U S A Date: 2004-03-25 Impact factor: 11.205

5. The enemy within: dormant retroviruses awaken.

Authors: Michael E Engel; Scott W Hiebert
Journal: Nat Med Date: 2010-05 Impact factor: 53.440

6. Human endogenous retroviral elements as indicators of ectopic recombination events in the primate genome.

Authors: Jennifer F Hughes; John M Coffin
Journal: Genetics Date: 2005-09-12 Impact factor: 4.562

7. Endogenous retroviral signatures predict immunotherapy response in clear cell renal cell carcinoma.

Authors: Christof C Smith; Kathryn E Beckermann; Dante S Bortone; Aguirre A De Cubas; Lisa M Bixby; Samuel J Lee; Anshuman Panda; Shridar Ganesan; Gyan Bhanot; Eric M Wallen; Matthew I Milowsky; William Y Kim; W Kimryn Rathmell; Ronald Swanstrom; Joel S Parker; Jonathan S Serody; Sara R Selitsky; Benjamin G Vincent
Journal: J Clin Invest Date: 2018-10-02 Impact factor: 14.808

Review 8. Unraveling the web of viroinformatics: computational tools and databases in virus research.

Authors: Deepak Sharma; Pragya Priyadarshini; Sudhanshu Vrati
Journal: J Virol Date: 2014-11-26 Impact factor: 5.103

9. Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activity.

Authors: Robert Belshaw; Anna L A Dawson; John Woolven-Allen; Joanna Redding; Austin Burt; Michael Tristem
Journal: J Virol Date: 2005-10 Impact factor: 5.103

10. Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution.

Authors: Melanie Babcock; Adam Pavlicek; Elizabeth Spiteri; Catherine D Kashork; Ilya Ioshikhes; Lisa G Shaffer; Jerzy Jurka; Bernice E Morrow
Journal: Genome Res Date: 2003-12 Impact factor: 9.043