Literature DB >> 11752288

The European database on small subunit ribosomal RNA.

Jan Wuyts1, Yves Van de Peer, Tina Winkelmans, Rupert De Wachter.   

Abstract

The European database on SSU rRNA can be consulted via the World WideWeb at http://rrna.uia.ac.be/ssu/ and compiles all complete or nearly complete small subunit ribosomal RNA sequences. Sequences are provided in aligned format. The alignment takes into account the secondary structure information derived by comparative sequence analysis of thousands of sequences. Additional information such as literature references, taxonomy, secondary structure models and nucleotide variability maps, is also available.

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Year:  2002        PMID： 11752288      PMCID： PMC99113          DOI： 10.1093/nar/30.1.183

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  10 in total

1.  The European small subunit ribosomal RNA database.

Authors:  Y Van de Peer; P De Rijk; J Wuyts; T Winkelmans; R De Wachter
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The EMBL nucleotide sequence database.

Authors:  G Stoesser; W Baker; A van den Broek; E Camon; M Garcia-Pastor; C Kanz; T Kulikova; V Lombard; R Lopez; H Parkinson; N Redaschi; P Sterk; P Stoehr; M A Tuli
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA.

Authors:  J Wuyts; P De Rijk; Y Van de Peer; G Pison; P Rousseeuw; R De Wachter
Journal:  Nucleic Acids Res       Date:  2000-12-01       Impact factor: 16.971

4.  Structure of the 30S ribosomal subunit.

Authors:  B T Wimberly; D E Brodersen; W M Clemons; R J Morgan-Warren; A P Carter; C Vonrhein; T Hartsch; V Ramakrishnan
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

5.  DCSE, an interactive tool for sequence alignment and secondary structure research.

Authors:  P De Rijk; R De Wachter
Journal:  Comput Appl Biosci       Date:  1993-12

6.  The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA.

Authors:  Y Van de Peer; G Van der Auwera; R De Wachter
Journal:  J Mol Evol       Date:  1996-02       Impact factor: 2.395

7.  TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment.

Authors:  Y Van de Peer; R De Wachter
Journal:  Comput Appl Biosci       Date:  1994-09

8.  Collection of small subunit (16S- and 16S-like) ribosomal RNA structures.

Authors:  R R Gutell
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

9.  Compilation of small ribosomal subunit RNA structures.

Authors:  J M Neefs; Y Van de Peer; P De Rijk; S Chapelle; R De Wachter
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

10.  Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.

Authors:  J Brosius; T J Dull; D D Sleeter; H F Noller
Journal:  J Mol Biol       Date:  1981-05-15       Impact factor: 5.469
  10 in total
  65 in total

1.  GU receptors of double helices mediate tRNA movement in the ribosome.

Authors:  Matthieu G Gagnon; Sergey V Steinberg
Journal:  RNA       Date:  2002-07       Impact factor: 4.942

2.  probeBase: an online resource for rRNA-targeted oligonucleotide probes.

Authors:  Alexander Loy; Matthias Horn; Michael Wagner
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Rfam: an RNA family database.

Authors:  Sam Griffiths-Jones; Alex Bateman; Mhairi Marshall; Ajay Khanna; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  A possible tertiary rRNA interaction between expansion segments ES3 and ES6 in eukaryotic 40S ribosomal subunits.

Authors:  Gunnar Alkemar; Odd Nygård
Journal:  RNA       Date:  2003-01       Impact factor: 4.942

5.  Pfold: RNA secondary structure prediction using stochastic context-free grammars.

Authors:  Bjarne Knudsen; Jotun Hein
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  The promise of a DNA taxonomy.

Authors:  Mark L Blaxter
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-04-29       Impact factor: 6.237

7.  Pathway length and evolutionary constraint in amino acid biosynthesis.

Authors:  Matthew T Rutter; Rebecca A Zufall
Journal:  J Mol Evol       Date:  2004-02       Impact factor: 2.395

8.  ARB: a software environment for sequence data.

Authors:  Wolfgang Ludwig; Oliver Strunk; Ralf Westram; Lothar Richter; Harald Meier; Arno Buchner; Tina Lai; Susanne Steppi; Gangolf Jobb; Wolfram Förster; Igor Brettske; Stefan Gerber; Anton W Ginhart; Oliver Gross; Silke Grumann; Stefan Hermann; Ralf Jost; Andreas König; Thomas Liss; Ralph Lüssmann; Michael May; Björn Nonhoff; Boris Reichel; Robert Strehlow; Alexandros Stamatakis; Norbert Stuckmann; Alexander Vilbig; Michael Lenke; Thomas Ludwig; Arndt Bode; Karl-Heinz Schleifer
Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

9.  Secondary structure of two regions in expansion segments ES3 and ES6 with the potential of forming a tertiary interaction in eukaryotic 40S ribosomal subunits.

Authors:  Gunnar Alkemar; Odd Nygård
Journal:  RNA       Date:  2004-03       Impact factor: 4.942

10.  Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life.

Authors:  Laura Wegener Parfrey; Jessica Grant; Yonas I Tekle; Erica Lasek-Nesselquist; Hilary G Morrison; Mitchell L Sogin; David J Patterson; Laura A Katz
Journal:  Syst Biol       Date:  2010-07-23       Impact factor: 15.683
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