Literature DB >> 11752271

Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags.

Takeshi Kawashima1, Shuichi Kawashima, Yuji Kohara, Minoru Kanehisa, Kazuhiro W Makabe.   

Abstract

MAGEST is a database for maternal gene expression information for an ascidian, Halocynthia roretzi. The ascidian has become an animal model in developmental biological research because it shows a simple developmental process, and belongs to one of the chordate groups. Various data are deposited into the MAGEST database, e.g. the 3'- and 5'-tag sequences from the fertilized egg cDNA library, the results of similarity searches against GenBank and the expression data from whole mount in situ hybridization. Over the last 2 years, the data retrieval systems have been improved in several aspects, and the tag sequence entries have increased to over 20 000 clones. Additionally, we constructed a database, translated MAGEST, for the amino acid fragment sequences predicted from the EST data sets. Using this information comprehensively, we should obtain new information on gene functions. The MAGEST database is accessible via the Internet at http://www.genome.ad.jp/magest/.

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Year:  2002        PMID: 11752271      PMCID: PMC99134          DOI: 10.1093/nar/30.1.119

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

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Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  MAGEST: MAboya gene expression patterns and sequence tags.

Authors:  T Kawashima; S Kawashima; M Kanehisa; H Nishida; K W Makabe
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

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Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

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Authors:  H Nishida
Journal:  Int Rev Cytol       Date:  1997

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Authors:  M W Simmen; S Leitgeb; V H Clark; S J Jones; A Bird
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

8.  Large-scale cDNA analysis of the maternal genetic information in the egg of Halocynthia roretzi for a gene expression catalog of ascidian development.

Authors:  K W Makabe; T Kawashima; S Kawashima; T Minokawa; A Adachi; H Kawamura; H Ishikawa; R Yasuda; H Yamamoto; K Kondoh; S Arioka; Y Sasakura; A Kobayashi; K Yagi; K Shojima; Y Kondoh; S Kido; M Tsujinami; N Nishimura; M Takahashi; T Nakamura; M Kanehisa; M Ogasawara; T Nishikata; H Nishida
Journal:  Development       Date:  2001-07       Impact factor: 6.868

  8 in total
  5 in total

1.  The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program.

Authors:  Olivier Tassy; Delphine Dauga; Fabrice Daian; Daniel Sobral; François Robin; Pierre Khoueiry; David Salgado; Vanessa Fox; Danièle Caillol; Renaud Schiappa; Baptiste Laporte; Anne Rios; Guillaume Luxardi; Takehiro Kusakabe; Jean-Stéphane Joly; Sébastien Darras; Lionel Christiaen; Magali Contensin; Hélène Auger; Clément Lamy; Clare Hudson; Ute Rothbächer; Michael J Gilchrist; Kazuhiro W Makabe; Kohji Hotta; Shigeki Fujiwara; Nori Satoh; Yutaka Satou; Patrick Lemaire
Journal:  Genome Res       Date:  2010-07-20       Impact factor: 9.043

2.  Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos.

Authors:  Joshua F Coulcher; Agnès Roure; Rafath Chowdhury; Méryl Robert; Laury Lescat; Aurélie Bouin; Juliana Carvajal Cadavid; Hiroki Nishida; Sébastien Darras
Journal:  Elife       Date:  2020-11-16       Impact factor: 8.140

3.  MEPD: a Medaka gene expression pattern database.

Authors:  Thorsten Henrich; Mirana Ramialison; Rebecca Quiring; Beate Wittbrodt; Makoto Furutani-Seiki; Joachim Wittbrodt; Hisato Kondoh
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression.

Authors:  Osamu Ogasawara; Makiko Otsuji; Kouji Watanabe; Takayasu Iizuka; Takuro Tamura; Teruyoshi Hishiki; Shoko Kawamoto; Kousaku Okubo
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

5.  Structure-function evolution of the transforming acidic coiled coil genes revealed by analysis of phylogenetically diverse organisms.

Authors:  Ivan H Still; Ananthalakshmy K Vettaikkorumakankauv; Anthony DiMatteo; Ping Liang
Journal:  BMC Evol Biol       Date:  2004-06-18       Impact factor: 3.260

  5 in total

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