Literature DB >> 11752261

Genomic database resources for Dictyostelium discoideum.

Lisa Kreppel1, Alan R Kimmel.   

Abstract

Dictyostelium is an attractive model system for the study of mechanisms basic to cellular function or complex multicellular developmental processes. Recent advances in Dictyostelium genomics have generated a wide spectrum of resources. However, much of the current genomic sequence information is still not currently available through GenBank or related databases. Thus, many investigators are unaware that extensive sequence data from Dictyostelium has been compiled, or of its availability and access. Here, we discuss progress in Dictyostelium genomics and gene annotation, and highlight the primary portals for sequence access, manipulation and analysis (http://genome.imb-jena.de/dictyostelium/; http://dictygenome.bcm.tmc.edu/; http://www.sanger. ac.uk/Projects/D_discoideum/; http://www.csm.biol. tsukuba.ac.jp/cDNAproject.html).

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Year:  2002        PMID: 11752261      PMCID: PMC99139          DOI: 10.1093/nar/30.1.84

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  15 in total

1.  A high-resolution HAPPY map of Dictyostelium discoideum chromosome 6.

Authors:  B A Konfortov; H M Cohen; A T Bankier; P H Dear
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

Review 2.  Construction of full-length-enriched cDNA libraries. The oligo-capping method.

Authors:  Y Suzuki; S Sugano
Journal:  Methods Mol Biol       Date:  2001

3.  Genes lost during evolution.

Authors:  J Roelofs; P J Van Haastert
Journal:  Nature       Date:  2001-06-28       Impact factor: 49.962

4.  The Dictyostelium developmental cDNA project: generation and analysis of expressed sequence tags from the first-finger stage of development.

Authors:  T Morio; H Urushihara; T Saito; Y Ugawa; H Mizuno; M Yoshida; R Yoshino; B N Mitra; M Pi; T Sato; K Takemoto; H Yasukawa; J Williams; M Maeda; I Takeuchi; H Ochiai; Y Tanaka
Journal:  DNA Res       Date:  1998-12-31       Impact factor: 4.458

5.  The mitochondrial DNA of Dictyostelium discoideum: complete sequence, gene content and genome organization.

Authors:  S Ogawa; R Yoshino; K Angata; M Iwamoto; M Pi; K Kuroe; K Matsuo; T Morio; H Urushihara; K Yanagisawa; Y Tanaka
Journal:  Mol Gen Genet       Date:  2000-04

6.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

7.  The Gene-Finder computer tools for analysis of human and model organisms genome sequences.

Authors:  V Solovyev; A Salamov
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  1997

8.  Interpolated Markov models for eukaryotic gene finding.

Authors:  S L Salzberg; M Pertea; A L Delcher; M J Gardner; H Tettelin
Journal:  Genomics       Date:  1999-07-01       Impact factor: 5.736

9.  The complex repeats of Dictyostelium discoideum.

Authors:  G Glöckner; K Szafranski; T Winckler; T Dingermann; M A Quail; E Cox; L Eichinger; A A Noegel; A Rosenthal
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

10.  Ordered yeast artificial chromosome clones representing the Dictyostelium discoideum genome.

Authors:  A Kuspa; W F Loomis
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-28       Impact factor: 11.205

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  4 in total

1.  dictyBase: a new Dictyostelium discoideum genome database.

Authors:  Lisa Kreppel; Petra Fey; Pascale Gaudet; Eric Just; Warren A Kibbe; Rex L Chisholm; Alan R Kimmel
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 2.  Revamp a model-status and prospects of the Dictyostelium genome project.

Authors:  Ludwig Eichinger
Journal:  Curr Genet       Date:  2003-07-11       Impact factor: 3.886

3.  Intracellular replication of Mycobacterium marinum within Dictyostelium discoideum: efficient replication in the absence of host coronin.

Authors:  Jonathan M Solomon; Grace S Leung; Ralph R Isberg
Journal:  Infect Immun       Date:  2003-06       Impact factor: 3.441

4.  Analyses of cDNAs from growth and slug stages of Dictyostelium discoideum.

Authors:  Hideko Urushihara; Takahiro Morio; Tamao Saito; Yuji Kohara; Eiko Koriki; Hiroshi Ochiai; Mineko Maeda; Jeffrey G Williams; Ikuo Takeuchi; Yoshimasa Tanaka
Journal:  Nucleic Acids Res       Date:  2004-03-09       Impact factor: 16.971

  4 in total

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