Literature DB >> 11749575

SENECA: A platform-independent, distributed, and parallel system for computer-assisted structure elucidation in organic chemistry.

C Steinbeck1.   

Abstract

The program package SENECA for Computer-Assisted Structure Elucidation (CASE) of organic molecules is described. SENECA is written completely in the programming language Java and divided into a server, a client, and a gatekeeper part. While the client allows for input of spectroscopic information, the server part performs the actual structure elucidation by stochastically walking through constitution space while optimizing the molecule toward agreement with given spectral properties. The convergence is guided by simulated annealing. The gatekeeper administers a list of server processes, which can be retrieved by the client. The package is completely platform-independent and its server part can be distributed over the Internet or an intranet using a heterogeneous network of almost any number and type of computers, thus allowing for parallel CASE computations on ordinary networks, present in almost any institution.

Entities:  

Year:  2001        PMID: 11749575     DOI: 10.1021/ci000407n

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  12 in total

1.  Statistical filtering for NMR based structure generation.

Authors:  Jochen Junker
Journal:  J Cheminform       Date:  2011-08-11       Impact factor: 5.514

2.  Bioclipse 2: a scriptable integration platform for the life sciences.

Authors:  Ola Spjuth; Jonathan Alvarsson; Arvid Berg; Martin Eklund; Stefan Kuhn; Carl Mäsak; Gilleain Torrance; Johannes Wagener; Egon L Willighagen; Christoph Steinbeck; Jarl E S Wikberg
Journal:  BMC Bioinformatics       Date:  2009-12-03       Impact factor: 3.169

3.  Theoretical NMR correlations based Structure Discussion.

Authors:  Jochen Junker
Journal:  J Cheminform       Date:  2011-07-28       Impact factor: 5.514

4.  The Chemistry Development Kit (CDK): an open-source Java library for Chemo- and Bioinformatics.

Authors:  Christoph Steinbeck; Yongquan Han; Stefan Kuhn; Oliver Horlacher; Edgar Luttmann; Egon Willighagen
Journal:  J Chem Inf Comput Sci       Date:  2003 Mar-Apr

5.  Chemical graph generators.

Authors:  Mehmet Aziz Yirik; Christoph Steinbeck
Journal:  PLoS Comput Biol       Date:  2021-01-05       Impact factor: 4.475

6.  MAYGEN: an open-source chemical structure generator for constitutional isomers based on the orderly generation principle.

Authors:  Mehmet Aziz Yirik; Maria Sorokina; Christoph Steinbeck
Journal:  J Cheminform       Date:  2021-07-03       Impact factor: 5.514

7.  OMG: Open Molecule Generator.

Authors:  Julio E Peironcely; Miguel Rojas-Chertó; Davide Fichera; Theo Reijmers; Leon Coulier; Jean-Loup Faulon; Thomas Hankemeier
Journal:  J Cheminform       Date:  2012-09-17       Impact factor: 5.514

8.  Building blocks for automated elucidation of metabolites: natural product-likeness for candidate ranking.

Authors:  Kalai Vanii Jayaseelan; Christoph Steinbeck
Journal:  BMC Bioinformatics       Date:  2014-07-05       Impact factor: 3.169

Review 9.  Computational Methodologies in the Exploration of Marine Natural Product Leads.

Authors:  Florbela Pereira; Joao Aires-de-Sousa
Journal:  Mar Drugs       Date:  2018-07-13       Impact factor: 5.118

10.  Quantum isomer search.

Authors:  Jason P Terry; Prosper D Akrobotu; Christian F A Negre; Susan M Mniszewski
Journal:  PLoS One       Date:  2020-01-15       Impact factor: 3.240

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