Literature DB >> 33400699

Chemical graph generators.

Mehmet Aziz Yirik1, Christoph Steinbeck1.   

Abstract

Chemical graph generators are software packages to generate computer representations of chemical structures adhering to certain boundary conditions. Their development is a research topic of cheminformatics. Chemical graph generators are used in areas such as virtual library generation in drug design, in molecular design with specified properties, called inverse QSAR/QSPR, as well as in organic synthesis design, retrosynthesis or in systems for computer-assisted structure elucidation (CASE). CASE systems again have regained interest for the structure elucidation of unknowns in computational metabolomics, a current area of computational biology.

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Year:  2021        PMID: 33400699      PMCID: PMC7785115          DOI: 10.1371/journal.pcbi.1008504

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  19 in total

1.  The signature molecular descriptor. 2. Enumerating molecules from their extended valence sequences.

Authors:  Jean-Loup Faulon; Carla J Churchwell; Donald P Visco
Journal:  J Chem Inf Comput Sci       Date:  2003 May-Jun

2.  Circular fingerprints: flexible molecular descriptors with applications from physical chemistry to ADME.

Authors:  Robert C Glem; Andreas Bender; Catrin H Arnby; Lars Carlsson; Scott Boyer; James Smith
Journal:  IDrugs       Date:  2006-03

3.  Exhaustive Structure Generation for Inverse-QSPR/QSAR.

Authors:  Tomoyuki Miyao; Masamoto Arakawa; Kimito Funatsu
Journal:  Mol Inform       Date:  2010-01-12       Impact factor: 3.353

4.  Structure generation by reduction: a new strategy for computer-assisted structure elucidation.

Authors:  B D Christie; M E Munk
Journal:  J Chem Inf Comput Sci       Date:  1988-05

5.  The signature molecular descriptor. 4. Canonizing molecules using extended valence sequences.

Authors:  Jean-Loup Faulon; Michael J Collins; Robert D Carr
Journal:  J Chem Inf Comput Sci       Date:  2004 Mar-Apr

6.  RetroPath2.0: A retrosynthesis workflow for metabolic engineers.

Authors:  Baudoin Delépine; Thomas Duigou; Pablo Carbonell; Jean-Loup Faulon
Journal:  Metab Eng       Date:  2017-12-09       Impact factor: 9.783

7.  Theoretical NMR correlations based Structure Discussion.

Authors:  Jochen Junker
Journal:  J Cheminform       Date:  2011-07-28       Impact factor: 5.514

8.  Unique identifiers for small molecules enable rigorous labeling of their atoms.

Authors:  Hesam Dashti; William M Westler; John L Markley; Hamid R Eghbalnia
Journal:  Sci Data       Date:  2017-05-23       Impact factor: 6.444

9.  Application of Generative Autoencoder in De Novo Molecular Design.

Authors:  Thomas Blaschke; Marcus Olivecrona; Ola Engkvist; Jürgen Bajorath; Hongming Chen
Journal:  Mol Inform       Date:  2017-12-13       Impact factor: 3.353

10.  OMG: Open Molecule Generator.

Authors:  Julio E Peironcely; Miguel Rojas-Chertó; Davide Fichera; Theo Reijmers; Leon Coulier; Jean-Loup Faulon; Thomas Hankemeier
Journal:  J Cheminform       Date:  2012-09-17       Impact factor: 5.514

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  2 in total

1.  Surge: a fast open-source chemical graph generator.

Authors:  Brendan D McKay; Mehmet Aziz Yirik; Christoph Steinbeck
Journal:  J Cheminform       Date:  2022-04-23       Impact factor: 5.514

2.  MAYGEN: an open-source chemical structure generator for constitutional isomers based on the orderly generation principle.

Authors:  Mehmet Aziz Yirik; Maria Sorokina; Christoph Steinbeck
Journal:  J Cheminform       Date:  2021-07-03       Impact factor: 5.514

  2 in total

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