Literature DB >> 11741871

Utilization of L-ascorbate by Escherichia coli K-12: assignments of functions to products of the yjf-sga and yia-sgb operons.

Wen Shan Yew1, John A Gerlt.   

Abstract

Escherichia coli K-12 can ferment L-ascorbate. The operon encoding catabolic enzymes in the utilization of L-ascorbate (ula) has been identified; this operon of previously unknown function had been designated the yif-sga operon. Three enzymes in the pathway that produce D-xylulose 5-phosphate have been functionally characterized: 3-keto-L-gulonate 6-phosphate decarboxylase (UlaD), L-xylulose 5-phosphate 3-epimerase (UlaE), and L-ribulose 5-phosphate 4-epimerase (UlaF). Several products of the yia-sgb operon were also functionally characterized, although the substrate and physiological function of the operon remain unknown: 2,3-diketo-L-gulonate reductase (YiaK), 3-keto-L-gulonate kinase (LyxK), 3-keto-L-gulonate 6-phosphate decarboxylase (SgbH), and L-ribulose 5-phosphate 4-epimerase (SgbE).

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Year:  2002        PMID: 11741871      PMCID: PMC134747          DOI: 10.1128/JB.184.1.302-306.2002

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  16 in total

1.  Role of the yiaR and yiaS genes of Escherichia coli in metabolism of endogenously formed L-xylulose.

Authors:  E Ibañez; R Gimenez; T Pedraza; L Baldoma; J Aguilar; J Badia
Journal:  J Bacteriol       Date:  2000-08       Impact factor: 3.490

Review 2.  Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies.

Authors:  J A Gerlt; P C Babbitt
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

3.  beta-Keto-L-gulonic acid as an intermediate in the bacterial metabolism of ascorbic acid.

Authors:  W A VOLK; J L LARSEN
Journal:  J Biol Chem       Date:  1962-08       Impact factor: 5.157

4.  The Oxidation of Ascorbic Acid as Influenced by Intestinal Bacteria.

Authors:  W B Esselen; J E Fuller
Journal:  J Bacteriol       Date:  1939-05       Impact factor: 3.490

5.  Action of Intestinal Microörganisms on Ascorbic Acid.

Authors:  R M Young; L H James
Journal:  J Bacteriol       Date:  1942-07       Impact factor: 3.490

6.  The complete genome sequence of Escherichia coli K-12.

Authors:  F R Blattner; G Plunkett; C A Bloch; N T Perna; V Burland; M Riley; J Collado-Vides; J D Glasner; C K Rode; G F Mayhew; J Gregor; N W Davis; H A Kirkpatrick; M A Goeden; D J Rose; B Mau; Y Shao
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

7.  Activation of a cryptic gene encoding a kinase for L-xylulose opens a new pathway for the utilization of L-lyxose by Escherichia coli.

Authors:  J C Sánchez; R Gímenez; A Schneider; W D Fessner; L Baldomà; J Aguilar; J Badía
Journal:  J Biol Chem       Date:  1994-11-25       Impact factor: 5.157

8.  Discovering new enzymes and metabolic pathways: conversion of succinate to propionate by Escherichia coli.

Authors:  T Haller; T Buckel; J Rétey; J A Gerlt
Journal:  Biochemistry       Date:  2000-04-25       Impact factor: 3.162

9.  Role of metal ions in the reaction catalyzed by L-ribulose-5-phosphate 4-epimerase.

Authors:  L V Lee; R R Poyner; M V Vu; W W Cleland
Journal:  Biochemistry       Date:  2000-04-25       Impact factor: 3.162

10.  Effect of ascorbate on oxygen uptake and growth of Escherichia coli B.

Authors:  H E Richter; J Switala; P C Loewen
Journal:  Can J Microbiol       Date:  1988-06       Impact factor: 2.419

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  38 in total

1.  The gene yjfQ encodes the repressor of the yjfR-X regulon (ula), which is involved in L-ascorbate metabolism in Escherichia coli.

Authors:  Evangelina Campos; Juan Aguilar; Laura Baldoma; Josefa Badia
Journal:  J Bacteriol       Date:  2002-11       Impact factor: 3.490

2.  EFICAz: a comprehensive approach for accurate genome-scale enzyme function inference.

Authors:  Weidong Tian; Adrian K Arakaki; Jeffrey Skolnick
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

3.  The ascorbate transporter of Escherichia coli.

Authors:  Zhongge Zhang; Mohammad Aboulwafa; Meghan H Smith; Milton H Saier
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

4.  Toxin-antitoxin systems in Escherichia coli influence biofilm formation through YjgK (TabA) and fimbriae.

Authors:  Younghoon Kim; Xiaoxue Wang; Qun Ma; Xue-Song Zhang; Thomas K Wood
Journal:  J Bacteriol       Date:  2008-12-05       Impact factor: 3.490

Review 5.  Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks.

Authors:  John A Gerlt; Jason T Bouvier; Daniel B Davidson; Heidi J Imker; Boris Sadkhin; David R Slater; Katie L Whalen
Journal:  Biochim Biophys Acta       Date:  2015-04-18

6.  Role of porins in sensitivity of Escherichia coli to antibacterial activity of the lactoperoxidase enzyme system.

Authors:  Philipp De Spiegeleer; Jan Sermon; Kristof Vanoirbeek; Abram Aertsen; Chris W Michiels
Journal:  Appl Environ Microbiol       Date:  2005-07       Impact factor: 4.792

7.  Crystal structure of a phosphorylation-coupled vitamin C transporter.

Authors:  Ping Luo; Xinzhe Yu; Weiguang Wang; Shilong Fan; Xiaochun Li; Jiawei Wang
Journal:  Nat Struct Mol Biol       Date:  2015-02-16       Impact factor: 15.369

8.  Enterococcus faecalis grows on ascorbic acid.

Authors:  Ibrahim Mehmeti; Margrete Solheim; Ingolf F Nes; Helge Holo
Journal:  Appl Environ Microbiol       Date:  2013-05-24       Impact factor: 4.792

9.  Comparative transcriptome analysis of Methylibium petroleiphilum PM1 exposed to the fuel oxygenates methyl tert-butyl ether and ethanol.

Authors:  Krassimira R Hristova; Radomir Schmidt; Anu Y Chakicherla; Tina C Legler; Janice Wu; Patrick S Chain; Kate M Scow; Staci R Kane
Journal:  Appl Environ Microbiol       Date:  2007-09-21       Impact factor: 4.792

10.  The yiaKLX1X2PQRS and ulaABCDEFG gene systems are required for the aerobic utilization of L-ascorbate in Klebsiella pneumoniae strain 13882 with L-ascorbate-6-phosphate as the inducer.

Authors:  Evangelina Campos; Lucia de la Riva; Fernando Garces; Rosa Giménez; Juan Aguilar; Laura Baldoma; Josefa Badia
Journal:  J Bacteriol       Date:  2008-08-15       Impact factor: 3.490

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