Literature DB >> 11734560

Efficiency and accuracy of SOS-induced DNA polymerases replicating benzo[a]pyrene-7,8-diol 9,10-epoxide A and G adducts.

Xuan Shen1, Jane M Sayer, Heiko Kroth, Ingrid Ponten, Mike O'Donnell, Roger Woodgate, Donald M Jerina, Myron F Goodman.   

Abstract

Nucleotide incorporation fidelity, mismatch extension, and translesion DNA synthesis efficiencies were determined using SOS-induced Escherichia coli DNA polymerases (pol) II, IV, and V to copy 10R and 10S isomers of trans-opened benzo[a]pyrene-7,8-diol 9,10-epoxide (BaP DE) A and G adducts. A-BaP DE adducts were bypassed by pol V with moderate accuracy and considerably higher efficiency than by pol II or IV. Error-prone pol V copied G-BaP DE-adducted DNA poorly, forming A*G-BaP DE-S and -R mismatches over C*G-BaP DE-S and -R correct matches by factors of approximately 350- and 130-fold, respectively, even favoring G*G-BaP DE mismatches over correct matches by factors of 2-4-fold. In contrast, pol IV bypassed G-BaP DE adducts with the highest efficiency and fidelity, making misincorporations with a frequency of 10(-2) to 10(-4) depending on sequence context. G-BaP DE-S-adducted M13 DNA yielded 4-fold fewer plaques when transfected into SOS-induced DeltadinB (pol IV-deficient) mutant cells compared with the isogenic wild-type E. coli strain, consistent with the in vitro data showing that pol IV was most effective by far at copying the G-BaP DE-S adduct. SOS polymerases are adept at copying a variety of lesions, but the relative contribution of each SOS polymerase to copying damaged DNA appears to be determined by the lesion's identity.

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Year:  2001        PMID: 11734560     DOI: 10.1074/jbc.M109575200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  31 in total

1.  Translesion replication of benzo[a]pyrene and benzo[c]phenanthrene diol epoxide adducts of deoxyadenosine and deoxyguanosine by human DNA polymerase iota.

Authors:  Ekaterina G Frank; Jane M Sayer; Heiko Kroth; Eiji Ohashi; Haruo Ohmori; Donald M Jerina; Roger Woodgate
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

2.  Role of Escherichia coli DNA polymerase IV in in vivo replication fidelity.

Authors:  Wojciech Kuban; Piotr Jonczyk; Damian Gawel; Karolina Malanowska; Roel M Schaaper; Iwona J Fijalkowska
Journal:  J Bacteriol       Date:  2004-07       Impact factor: 3.490

3.  Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli.

Authors:  Jill C Layton; Patricia L Foster
Journal:  Mol Microbiol       Date:  2003-10       Impact factor: 3.501

4.  UmuD(2) inhibits a non-covalent step during DinB-mediated template slippage on homopolymeric nucleotide runs.

Authors:  James J Foti; Angela M Delucia; Catherine M Joyce; Graham C Walker
Journal:  J Biol Chem       Date:  2010-05-13       Impact factor: 5.157

5.  Role of DNA polymerase IV in Escherichia coli SOS mutator activity.

Authors:  Wojciech Kuban; Magdalena Banach-Orlowska; Roel M Schaaper; Piotr Jonczyk; Iwona J Fijalkowska
Journal:  J Bacteriol       Date:  2006-09-15       Impact factor: 3.490

6.  What a difference a decade makes: insights into translesion DNA synthesis.

Authors:  Wei Yang; Roger Woodgate
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-26       Impact factor: 11.205

7.  Y-Family DNA polymerases may use two different dNTP shapes for insertion: a hypothesis and its implications.

Authors:  Sushil Chandani; Edward L Loechler
Journal:  J Mol Graph Model       Date:  2008-11-08       Impact factor: 2.518

Review 8.  Translesion DNA synthesis and mutagenesis in prokaryotes.

Authors:  Robert P Fuchs; Shingo Fujii
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-12-01       Impact factor: 10.005

9.  Efficient and accurate bypass of N2-(1-carboxyethyl)-2'-deoxyguanosine by DinB DNA polymerase in vitro and in vivo.

Authors:  Bifeng Yuan; Huachuan Cao; Yong Jiang; Haizheng Hong; Yinsheng Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-17       Impact factor: 11.205

10.  Amino acid architecture that influences dNTP insertion efficiency in Y-family DNA polymerase V of E. coli.

Authors:  Kwang Young Seo; Jun Yin; Prashant Donthamsetti; Sushil Chandani; Chui Hong Lee; Edward L Loechler
Journal:  J Mol Biol       Date:  2009-07-14       Impact factor: 5.469

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