Literature DB >> 11728441

An in vitro DNA virus for in vitro protein evolution.

I Tabuchi1, S Soramoto, N Nemoto, Y Husimi.   

Abstract

In vitro virus is a molecular construct for in vitro protein evolution, which requires some mechanism to link phenotype to genotype. The first in vitro virus was realized by bonding a nascent protein with its coding mRNA via puromycin in in vitro translation. We report a new construct of in vitro DNA virus. The virion was a covalent cDNA-protein fusion, and virion formation did not require any modification of mRNA. Due to intactness of mRNA, this type of in vitro DNA virus will take the next step toward in vitro autonomous evolution, just like in vivo viral evolution in a cellstat.

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Year:  2001        PMID: 11728441     DOI: 10.1016/s0014-5793(01)03075-7

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  15 in total

1.  DNA display for in vitro selection of diverse peptide libraries.

Authors:  Masato Yonezawa; Nobuhide Doi; Yuko Kawahashi; Toru Higashinakagawa; Hiroshi Yanagawa
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

2.  Correlated flexible molecular coding and molecular evolvability.

Authors:  Y Husimi; T Aita; I Tabuchi
Journal:  J Biol Phys       Date:  2002-09       Impact factor: 1.365

3.  DeCoDe: degenerate codon design for complete protein-coding DNA libraries.

Authors:  Tyler C Shimko; Polly M Fordyce; Yaron Orenstein
Journal:  Bioinformatics       Date:  2020-06-01       Impact factor: 6.937

4.  In vitro selection of proteins with desired characteristics using mRNA-display.

Authors:  C Alexander Valencia; Jianwei Zou; Rihe Liu
Journal:  Methods       Date:  2012-11-28       Impact factor: 3.608

5.  Novel concept microarray enabling PCR and multistep reactions through pipette-free aperture-to-aperture parallel transfer.

Authors:  Yasunori Kinoshita; Takahiro Tayama; Koichiro Kitamura; M Salimullah; Hidekazu Uchida; Miho Suzuki; Yuzuru Husimi; Koichi Nishigaki
Journal:  BMC Biotechnol       Date:  2010-10-06       Impact factor: 2.563

Review 6.  Directing evolution of novel ligands by mRNA display.

Authors:  Golnaz Kamalinia; Brian J Grindel; Terry T Takahashi; Steven W Millward; Richard W Roberts
Journal:  Chem Soc Rev       Date:  2021-06-24       Impact factor: 60.615

7.  Peptide-Modulated Activity Enhancement of Acidic Protease Cathepsin E at Neutral pH.

Authors:  Masayuki Komatsu; Madhu Biyani; Sunita Ghimire Gautam; Koichi Nishigaki
Journal:  Int J Pept       Date:  2012-12-17

8.  An mRNA-protein fusion at N-terminus for evolutionary protein engineering.

Authors:  Shingo Ueno; Hidenao Arai; Miho Suzuki; Yuzuru Husimi
Journal:  Int J Biol Sci       Date:  2007-08-29       Impact factor: 6.580

9.  An Efficient Ligation Method in the Making of an in vitro Virus for in vitro Protein Evolution.

Authors:  Ichiro Tabuchi; Sayaka Soramoto; Miho Suzuki; Koichi Nishigaki; Naoto Nemoto; Yuzuru Husimi
Journal:  Biol Proced Online       Date:  2002-10-28       Impact factor: 3.244

10.  Multi-line split DNA synthesis: a novel combinatorial method to make high quality peptide libraries.

Authors:  Ichiro Tabuchi; Sayaka Soramoto; Shingo Ueno; Yuzuru Husimi
Journal:  BMC Biotechnol       Date:  2004-09-01       Impact factor: 2.563

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