Literature DB >> 11720980

Effect of local molecular shape and anisotropic reactivity on the rate of diffusion-controlled reactions.

A I Shushin1, A V Barzykin.   

Abstract

The role of distance-dependent anisotropic reactivity and molecular geometry in the vicinity of localized reaction centers in influencing the rate of bimolecular diffusion-controlled reactions is analyzed in detail, both analytically and numerically. The effect of local molecular shape is considered within the model of reflective hemispheres of small radius l(h) on the surfaces of otherwise spherical molecules of radius R (l(h) << R). The distance-dependent reactivity is modeled by reactive hemispheres of radius l(r) on top of the reflective hemispheres (l(r) << R). It is shown that the presence of the reflective hemispheres leads to a markedly large increase of the reaction rate. The maximum effect is ~R/l(h) >> 1 times, as described by the ratio of local to average molecular curvature. It is observed for l(h) approximately R(l(r)/R)(1/2) >> l(r). The effect of thickness of the reaction regions is described within the model of reactive cylinders of height l(r) and angular radius theta << 1. It is shown that the characteristic parameter in the expansion of the reaction rate as a function of l(r)/R is l(r)/(Rtheta(2)), and therefore, even for small relative thickness d = l(r)/theta, its effect on the rate is very strong, i.e., the conventional model of reactive patches, which assumes zero thickness of the reaction region, may considerably underestimate the reaction rate.

Mesh:

Year:  2001        PMID: 11720980      PMCID: PMC1301774          DOI: 10.1016/S0006-3495(01)75950-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  12 in total

1.  Effect of anisotropic reactivity on the rate of diffusion-controlled reactions: comparative analysis of the models of patches and hemispheres.

Authors:  A V Barzykin; A I Shushin
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

2.  Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar.

Authors:  M Vijayakumar; K Y Wong; G Schreiber; A R Fersht; A Szabo; H X Zhou
Journal:  J Mol Biol       Date:  1998-05-22       Impact factor: 5.469

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Authors:  H Wendt; L Leder; H Härmä; I Jelesarov; A Baici; H R Bosshard
Journal:  Biochemistry       Date:  1997-01-07       Impact factor: 3.162

4.  Orientation constraints in diffusion-limited macromolecular association. The role of surface diffusion as a rate-enhancing mechanism.

Authors:  O G Berg
Journal:  Biophys J       Date:  1985-01       Impact factor: 4.033

5.  Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 1. Diffusion-controlled association and femtomolar binding for the cognate complex.

Authors:  R Wallis; G R Moore; R James; C Kleanthous
Journal:  Biochemistry       Date:  1995-10-24       Impact factor: 3.162

6.  Rapid, electrostatically assisted association of proteins.

Authors:  G Schreiber; A R Fersht
Journal:  Nat Struct Biol       Date:  1996-05

7.  Brownian dynamics study of the influences of electrostatic interaction and diffusion on protein-protein association kinetics.

Authors:  H X Zhou
Journal:  Biophys J       Date:  1993-06       Impact factor: 4.033

8.  Diffusion-controlled bimolecular reaction rates. The effect of rotational diffusion and orientation constraints.

Authors:  D Shoup; G Lipari; A Szabo
Journal:  Biophys J       Date:  1981-12       Impact factor: 4.033

9.  Interaction of barnase with its polypeptide inhibitor barstar studied by protein engineering.

Authors:  G Schreiber; A R Fersht
Journal:  Biochemistry       Date:  1993-05-18       Impact factor: 3.162

10.  Reduction of horse heart ferricytochrome c by bovine liver ferrocytochrome b5. Experimental and theoretical analysis.

Authors:  L D Eltis; R G Herbert; P D Barker; A G Mauk; S H Northrup
Journal:  Biochemistry       Date:  1991-04-16       Impact factor: 3.162

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  2 in total

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Authors:  Leonardo Dagdug; Marco-Vinicio Vázquez; Alexander M Berezhkovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2016-12-07       Impact factor: 3.488

2.  Note: Effect of a small surface defect on the Smoluchowski rate constant and capacitance of a spherical capacitor.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2017-09-14       Impact factor: 3.488

  2 in total

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