Literature DB >> 11717499

Matrix methods for solving protein substructures of chlorine and sulfur from anomalous data.

R A de Graaff1, M Hilge, J L van der Plas, J P Abrahams.   

Abstract

The weak signal obtained from the anomalous scattering (at lambda = 1.54 A) of naturally occurring elements such as sulfur, phosphorus and ordered solvent chloride ions is used to determine the atomic positions of these atoms. Two examples are discussed: the sulfur and chlorine substructure of tetragonal hen egg-white lysozyme and an oligonucleotide containing ten P atoms. The substructure of lysozyme was also solved from Cu K(alpha) radiation data collected on a standard rotating-anode generator. The results presented here are an illustration of the power of the matrix methods, which are to be implemented in next distribution of the direct methods package CRUNCH.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11717499     DOI: 10.1107/s0907444901016535

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  19 in total

1.  A multivariate likelihood SIRAS function for phasing and model refinement.

Authors:  Pavol Skubák; Garib Murshudov; Navraj S Pannu
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-09-16

2.  Structure of the PilM-PilN inner membrane type IV pilus biogenesis complex from Thermus thermophilus.

Authors:  Vijaykumar Karuppiah; Jeremy P Derrick
Journal:  J Biol Chem       Date:  2011-05-19       Impact factor: 5.157

3.  Macromolecular X-ray structure determination using weak, single-wavelength anomalous data.

Authors:  Gábor Bunkóczi; Airlie J McCoy; Nathaniel Echols; Ralf W Grosse-Kunstleve; Paul D Adams; James M Holton; Randy J Read; Thomas C Terwilliger
Journal:  Nat Methods       Date:  2014-12-22       Impact factor: 28.547

4.  ε, a new subunit of RNA polymerase found in gram-positive bacteria.

Authors:  Andrew N Keller; Xiao Yang; Jana Wiedermannová; Olivier Delumeau; Libor Krásný; Peter J Lewis
Journal:  J Bacteriol       Date:  2014-08-04       Impact factor: 3.490

5.  Improving the diffraction of apoA-IV crystals through extreme dehydration.

Authors:  Xiaodi Deng; W Sean Davidson; Thomas B Thompson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

6.  Protein Crystallography from the Perspective of Technology Developments.

Authors:  Xiao-Dong Su; Heng Zhang; Thomas C Terwilliger; Anders Liljas; Junyu Xiao; Yuhui Dong
Journal:  Crystallogr Rev       Date:  2015       Impact factor: 2.467

7.  Structure of the human Cereblon-DDB1-lenalidomide complex reveals basis for responsiveness to thalidomide analogs.

Authors:  Philip P Chamberlain; Antonia Lopez-Girona; Karen Miller; Gilles Carmel; Barbra Pagarigan; Barbara Chie-Leon; Emily Rychak; Laura G Corral; Yan J Ren; Maria Wang; Mariko Riley; Silvia L Delker; Takumi Ito; Hideki Ando; Tomoyuki Mori; Yoshinori Hirano; Hiroshi Handa; Toshio Hakoshima; Thomas O Daniel; Brian E Cathers
Journal:  Nat Struct Mol Biol       Date:  2014-08-10       Impact factor: 15.369

8.  Localization and orientation of heavy-atom cluster compounds in protein crystals using molecular replacement.

Authors:  Sven O Dahms; Miriam Kuester; Carsten Streb; Christian Roth; Norbert Sträter; Manuel E Than
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-01-19

9.  Structural basis of protein phosphatase 2A stable latency.

Authors:  Li Jiang; Vitali Stanevich; Kenneth A Satyshur; Mei Kong; Guy R Watkins; Brian E Wadzinski; Rituparna Sengupta; Yongna Xing
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Structure of the Ca2+-dependent PP2A heterotrimer and insights into Cdc6 dephosphorylation.

Authors:  Nathan Wlodarchak; Feng Guo; Kenneth A Satyshur; Li Jiang; Philip D Jeffrey; Tingwan Sun; Vitali Stanevich; Marc C Mumby; Yongna Xing
Journal:  Cell Res       Date:  2013-06-11       Impact factor: 25.617

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.