Literature DB >> 11716736

A dipolar coupling based strategy for simultaneous resonance assignment and structure determination of protein backbones.

F Tian1, H Valafar, J H Prestegard.   

Abstract

A new approach for simultaneous protein backbone resonance assignment and structure determination by NMR is introduced. This approach relies on recent advances in high-resolution NMR spectroscopy that allow observation of anisotropic interactions, such as dipolar couplings, from proteins partially aligned in field ordered media. Residual dipolar couplings are used for both geometric information and a filter in the assembly of residues in a sequential manner. Experimental data were collected in less than one week on a small redox protein, rubredoxin, that was 15N enriched but not enriched above 1% natural abundance in 13C. Given the acceleration possible with partial 13C enrichment, the protocol described should provide a very rapid route to protein structure determination. This is critical for the structural genomics initiative where protein expression and structural determination in a high-throughput manner will be needed.

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Year:  2001        PMID: 11716736     DOI: 10.1021/ja011806h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  46 in total

1.  Protein loop closure using orientational restraints from NMR data.

Authors:  Chittaranjan Tripathy; Jianyang Zeng; Pei Zhou; Bruce Randall Donald
Journal:  Proteins       Date:  2011-12-13

2.  Protein sequential resonance assignments by combinatorial enumeration using 13C alpha chemical shifts and their (i, i-1) sequential connectivities.

Authors:  Michael Andrec; Ronald M Levy
Journal:  J Biomol NMR       Date:  2002-08       Impact factor: 2.835

3.  Chemical shift-dependent apparent scalar couplings: an alternative concept of chemical shift monitoring in multi-dimensional NMR experiments.

Authors:  Witek Kwiatkowski; Roland Riek
Journal:  J Biomol NMR       Date:  2003-04       Impact factor: 2.835

4.  Protein structure prediction using sparse dipolar coupling data.

Authors:  Youxing Qu; Jun-tao Guo; Victor Olman; Ying Xu
Journal:  Nucleic Acids Res       Date:  2004-01-26       Impact factor: 16.971

5.  Determination of protein global folds using backbone residual dipolar coupling and long-range NOE restraints.

Authors:  Alexander W Giesen; Steve W Homans; Jonathan Miles Brown
Journal:  J Biomol NMR       Date:  2003-01       Impact factor: 2.835

6.  Determination of molecular alignment tensors without backbone resonance assignment: Aid to rapid analysis of protein-protein interactions.

Authors:  Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2003-09       Impact factor: 2.835

7.  Role for NMR in structural genomics.

Authors:  Michael A Kennedy; Gaetano T Montelione; Cheryl H Arrowsmith; John L Markley
Journal:  J Struct Funct Genomics       Date:  2002

8.  Exact solutions for internuclear vectors and backbone dihedral angles from NH residual dipolar couplings in two media, and their application in a systematic search algorithm for determining protein backbone structure.

Authors:  Lincong Wang; Bruce Randall Donald
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

9.  Assignment of protein backbone resonances using connectivity, torsion angles and 13Calpha chemical shifts.

Authors:  Laura C Morris; Homayoun Valafar; James H Prestegard
Journal:  J Biomol NMR       Date:  2004-05       Impact factor: 2.835

10.  Measurement of residual dipolar couplings from 1Halpha to 13Calpha and 15N using a simple HNCA-based experiment.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

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