Literature DB >> 11711195

Embryogenomics: developmental biology meets genomics.

M S Ko1.   

Abstract

Fundamental questions in developmental biology are: what genes are expressed, where and when they are expressed, what is the level of expression and how are these programs changed by the functional and structural alteration of genes? These questions have been addressed by studying one gene at a time, but a new research field that handles many genes in parallel is emerging. The methodology is at the interface of large-scale genomics approaches and developmental biology. Genomics needs developmental biology because one of the goals of genomics--collection and analysis of all genes in an organism--cannot be completed without working on embryonic tissues in which many genes are uniquely expressed. However, developmental biology needs genomics--the high-throughput approaches of genomics generate information about genes and pathways that can give an integrated view of complex processes. This article discusses these new approaches and their applications to mammalian developmental biology.

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Year:  2001        PMID: 11711195     DOI: 10.1016/s0167-7799(01)01806-6

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  21 in total

1.  Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set.

Authors:  Vincent VanBuren; Yulan Piao; Dawood B Dudekula; Yong Qian; Mark G Carter; Patrick R Martin; Carole A Stagg; Uwem C Bassey; Kazuhiro Aiba; Toshio Hamatani; George J Kargul; Amber G Luo; Janet Kelso; Winston Hide; Minoru S H Ko
Journal:  Genome Res       Date:  2002-12       Impact factor: 9.043

2.  In situ-synthesized novel microarray optimized for mouse stem cell and early developmental expression profiling.

Authors:  Mark G Carter; Toshio Hamatani; Alexei A Sharov; Condie E Carmack; Yong Qian; Kazuhiro Aiba; Naomi T Ko; Dawood B Dudekula; Pius M Brzoska; S Stuart Hwang; Minoru S H Ko
Journal:  Genome Res       Date:  2003-05       Impact factor: 9.043

3.  High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization.

Authors:  Toshiyuki Yoshikawa; Yulan Piao; Jinhui Zhong; Ryo Matoba; Mark G Carter; Yuxia Wang; Ilya Goldberg; Minoru S H Ko
Journal:  Gene Expr Patterns       Date:  2005-12-01       Impact factor: 1.224

Review 4.  Global gene expression profiling of preimplantation embryos.

Authors:  Toshio Hamatani; Minoru Sh Ko; Mitsutoshi Yamada; Naoaki Kuji; Yuri Mizusawa; Mayumi Shoji; Tomonori Hada; Hironori Asada; Tetsuo Maruyama; Yasunori Yoshimura
Journal:  Hum Cell       Date:  2006-08       Impact factor: 4.174

Review 5.  Expression profiling of the mouse early embryo: reflections and perspectives.

Authors:  Minoru S H Ko
Journal:  Dev Dyn       Date:  2006-09       Impact factor: 3.780

6.  The transcriptome of human oocytes.

Authors:  Arif Murat Kocabas; Javier Crosby; Pablo J Ross; Hasan H Otu; Zeki Beyhan; Handan Can; Wai-Leong Tam; Guilherme J M Rosa; Robert G Halgren; Bing Lim; Emilio Fernandez; Jose Bernardo Cibelli
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-12       Impact factor: 11.205

7.  Gene expression profiling of mouse embryos with microarrays.

Authors:  Alexei A Sharov; Yulan Piao; Minoru S H Ko
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

Review 8.  Recent Advances in Animal Models of Zika Virus Infection.

Authors:  Shupeng Dong; Qiming Liang
Journal:  Virol Sin       Date:  2018-03-14       Impact factor: 4.327

9.  A lentiviral cDNA library employing lambda recombination used to clone an inhibitor of human immunodeficiency virus type 1-induced cell death.

Authors:  Yuji Kawano; Takeshi Yoshida; Kuniko Hieda; Jun Aoki; Hiroyuki Miyoshi; Yoshio Koyanagi
Journal:  J Virol       Date:  2004-10       Impact factor: 5.103

10.  Transcription of the rat testis-specific Rtdpoz-T1 and -T2 retrogenes during embryo development: co-transcription and frequent exonisation of transposable element sequences.

Authors:  Chiu-Jung Huang; Wan-Yi Lin; Che-Ming Chang; Kong-Bung Choo
Journal:  BMC Mol Biol       Date:  2009-07-25       Impact factor: 2.946

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