Literature DB >> 11701634

Genetic perspectives on human origins and differentiation.

H Harpending1, A Rogers.   

Abstract

This is a review of genetic evidence about the ancient demography of the ancestors of our species and about the genesis of worldwide human diversity. The issue of whether or not a population size bottleneck occurred among our ancestors is under debate among geneticists as well as among anthropologists. The bottleneck, if it occurred, would confirm the Garden of Eden (GOE) model of the origin of modern humans. The competing model, multiregional evolution (MRE), posits that the number of human ancestors has been large, occupying much of the temperate Old World for the last two million years. While several classes of genetic marker seem to contain a strong signal of demographic recovery from a small number of ancestors, other nuclear loci show no such signal. The pattern at these loci is compatible with the existence of widespread balancing selection in humans. The study of human diversity at (putatively) neutral genetic marker loci has been hampered since the beginning by ascertainment bias since they were discovered in Europeans. The high levels of polymorphism at microsatellite loci means that they are free of this bias. Microsatellites exhibit a clear almost linear diversity gradient away from Africa, so that New World populations are approximately 15% less diverse than African populations. This pattern is not compatible with a model of a single large population expansion and colonization of most of the Earth by our ancestors but suggests, instead, gradual loss of diversity in successive colonization bottlenecks as our species grew and spread.

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Year:  2000        PMID: 11701634     DOI: 10.1146/annurev.genom.1.1.361

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   8.929


  76 in total

Review 1.  Order emerging from chaos in human evolutionary genetics.

Authors:  A R Rogers
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Population structure and history in East Asia.

Authors:  Y C Ding; S Wooding; H C Harpending; H C Chi; H P Li; Y X Fu; J F Pang; Y G Yao; J G Yu; R Moyzis; Y Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

3.  Y genetic data support the Neolithic demic diffusion model.

Authors:  Lounes Chikhi; Richard A Nichols; Guido Barbujani; Mark A Beaumont
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-07       Impact factor: 11.205

4.  The matrix coalescent and an application to human single-nucleotide polymorphisms.

Authors:  Stephen Wooding; Alan Rogers
Journal:  Genetics       Date:  2002-08       Impact factor: 4.562

5.  Extensive linkage disequilibrium, a common 16.7-kilobase deletion, and evidence of balancing selection in the human protocadherin alpha cluster.

Authors:  James P Noonan; Jun Li; Loan Nguyen; Chenier Caoile; Mark Dickson; Jane Grimwood; Jeremy Schmutz; Marcus W Feldman; Richard M Myers
Journal:  Am J Hum Genet       Date:  2003-02-07       Impact factor: 11.025

6.  A population threshold for functional polymorphisms.

Authors:  Gane Ka-Shu Wong; Zhiyong Yang; Douglas A Passey; Miho Kibukawa; Marcia Paddock; Chun-Rong Liu; Lars Bolund; Jun Yu
Journal:  Genome Res       Date:  2003-08       Impact factor: 9.043

7.  A strong signature of balancing selection in the 5' cis-regulatory region of CCR5.

Authors:  Michael J Bamshad; Srinivas Mummidi; Enrique Gonzalez; Seema S Ahuja; Diane M Dunn; W Scott Watkins; Stephen Wooding; Anne C Stone; Lynn B Jorde; Robert B Weiss; Sunil K Ahuja
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

8.  Minimal introns are not "junk".

Authors:  Jun Yu; Zhiyong Yang; Miho Kibukawa; Marcia Paddock; Douglas A Passey; Gane Ka-Shu Wong
Journal:  Genome Res       Date:  2002-08       Impact factor: 9.043

9.  Variation at 16 STR loci in Rwandans (Hutu) and implications on profile frequency estimation in Bantu-speakers.

Authors:  Sergio Tofanelli; Ilaria Boschi; Stefania Bertoneri; Valentina Coia; Luca Taglioli; Marcello Giovanni Franceschi; Giovanni Destro-Bisol; Vincenzo Pascali; Giorgio Paoli
Journal:  Int J Legal Med       Date:  2003-02-15       Impact factor: 2.686

10.  The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations.

Authors:  Gabor T Marth; Eva Czabarka; Janos Murvai; Stephen T Sherry
Journal:  Genetics       Date:  2004-01       Impact factor: 4.562

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