Literature DB >> 11701329

GPMAW--a software tool for analyzing proteins and peptides.

S Peri1, H Steen, A Pandey.   

Abstract

General Protein/Mass Analysis for Windows (GPMAW) is a valuable piece of software for any molecular biologist, biochemist or mass spectrometrist wishing to analyze protein or peptide sequences. All steps from the acquisition of protein sequence from a built-in web interface, to proteolytic digests, theoretical peptide fragmentation, detailed annotation of sequences and secondary structure prediction, can be performed rapidly and intuitively without first having to spend days reading manuals.

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Year:  2001        PMID: 11701329     DOI: 10.1016/s0968-0004(01)01954-5

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  39 in total

1.  Improved methodology for the affinity isolation of human protein complexes expressed at near endogenous levels.

Authors:  Michal Domanski; Kelly Molloy; Hua Jiang; Brian T Chait; Michael P Rout; Torben Heick Jensen; John LaCava
Journal:  Biotechniques       Date:  2012-05       Impact factor: 1.993

2.  StavroX--a software for analyzing crosslinked products in protein interaction studies.

Authors:  Michael Götze; Jens Pettelkau; Sabine Schaks; Konstanze Bosse; Christian H Ihling; Fabian Krauth; Romy Fritzsche; Uwe Kühn; Andrea Sinz
Journal:  J Am Soc Mass Spectrom       Date:  2011-10-25       Impact factor: 3.109

3.  Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D.

Authors:  Daniele Fabris; Eizadora T Yu
Journal:  J Mass Spectrom       Date:  2010-08       Impact factor: 1.982

4.  Hydrogen/deuterium exchange memory NMR reveals structural epitopes involved in IgE cross-reactivity of allergenic lipid transfer proteins.

Authors:  Martina Di Muzio; Sabrina Wildner; Sara Huber; Michael Hauser; Eva Vejvar; Werner Auzinger; Christof Regl; Josef Laimer; Danila Zennaro; Nicole Wopfer; Christian G Huber; Ronald van Ree; Adriano Mari; Peter Lackner; Fatima Ferreira; Mario Schubert; Gabriele Gadermaier
Journal:  J Biol Chem       Date:  2020-12-18       Impact factor: 5.157

5.  Isotope-labeled cross-linkers and Fourier transform ion cyclotron resonance mass spectrometry for structural analysis of a protein/peptide complex.

Authors:  Christian Ihling; Andreas Schmidt; Stefan Kalkhof; Daniela M Schulz; Christoph Stingl; Karl Mechtler; Michael Haack; Annette G Beck-Sickinger; Dermot M F Cooper; Andrea Sinz
Journal:  J Am Soc Mass Spectrom       Date:  2006-06-05       Impact factor: 3.109

Review 6.  Chemical cross-linking and native mass spectrometry: A fruitful combination for structural biology.

Authors:  Andrea Sinz; Christian Arlt; Dror Chorev; Michal Sharon
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

7.  Identification of protein interfaces between α-synuclein, the principal component of Lewy bodies in Parkinson disease, and the molecular chaperones human Hsc70 and the yeast Ssa1p.

Authors:  Virginie Redeker; Samantha Pemberton; Willy Bienvenut; Luc Bousset; Ronald Melki
Journal:  J Biol Chem       Date:  2012-07-26       Impact factor: 5.157

8.  p25alpha relocalizes in oligodendroglia from myelin to cytoplasmic inclusions in multiple system atrophy.

Authors:  Yun Ju C Song; Ditte M S Lundvig; Yue Huang; Wei Ping Gai; Peter C Blumbergs; Peter Højrup; Daniel Otzen; Glenda M Halliday; Poul H Jensen
Journal:  Am J Pathol       Date:  2007-09-06       Impact factor: 4.307

9.  Differential expression and processing of transforming growth factor beta induced protein (TGFBIp) in the normal human cornea during postnatal development and aging.

Authors:  Henrik Karring; Kasper Runager; Zuzana Valnickova; Ida B Thøgersen; Torben Møller-Pedersen; Gordon K Klintworth; Jan J Enghild
Journal:  Exp Eye Res       Date:  2009-09-26       Impact factor: 3.467

10.  Comparative analysis of proteome maps of silkworm hemolymph during different developmental stages.

Authors:  Yong Hou; Yong Zou; Fei Wang; Jing Gong; Xiaowu Zhong; Qingyou Xia; Ping Zhao
Journal:  Proteome Sci       Date:  2010-09-08       Impact factor: 2.480

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