Literature DB >> 11697217

Chromosomal editing in Escherichia coli. Vectors for DNA integration and excision.

P Balbás1, G Gosset.   

Abstract

Chromosomal editing constitutes the direct and specific modification of the genetic information present in the chromosome. In the bacterium Escherichia coli, strategies were originally developed for the production of specific proteins, the genotypic improvement of strains, and the analysis of regulation of gene expression. However, with the emerging field of metabolic engineering and genomics, efficient means of targeting specific genetic mutations into the chromosome are most useful. In this review, a summary of the systems currently available to generate insertions and deletions in the chromosome of E. coli are presented, as well as the current knowledge about the genetic mechanisms responsible for these processes.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11697217     DOI: 10.1385/MB:19:1:001

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  63 in total

Review 1.  Enzymes and molecular mechanisms of genetic recombination.

Authors:  S C West
Journal:  Annu Rev Biochem       Date:  1992       Impact factor: 23.643

2.  Genomic replacement in Escherichia coli K-12 using covalently closed circular plasmid DNA.

Authors:  K L Oden; L C DeVeaux; C R Vibat; J E Cronan; R B Gennis
Journal:  Gene       Date:  1990-11-30       Impact factor: 3.688

3.  The complete genome sequence of Escherichia coli K-12.

Authors:  F R Blattner; G Plunkett; C A Bloch; N T Perna; V Burland; M Riley; J Collado-Vides; J D Glasner; C K Rode; G F Mayhew; J Gregor; N W Davis; H A Kirkpatrick; M A Goeden; D J Rose; B Mau; Y Shao
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

4.  A versatile method for integration of genes and gene fusions into the lambda attachment site of Escherichia coli.

Authors:  T Atlung; A Nielsen; L J Rasmussen; L J Nellemann; F Holm
Journal:  Gene       Date:  1991-10-30       Impact factor: 3.688

5.  A family of removable cassettes designed to obtain antibiotic-resistance-free genomic modifications of Escherichia coli and other bacteria.

Authors:  B Palmeros; J Wild; W Szybalski; S Le Borgne; G Hernández-Chávez; G Gosset; F Valle; F Bolivar
Journal:  Gene       Date:  2000-04-18       Impact factor: 3.688

6.  Chi-dependent formation of linear plasmid DNA in exonuclease-deficient recBCD+ strains of Escherichia coli.

Authors:  M M Zaman; T C Boles
Journal:  J Bacteriol       Date:  1994-08       Impact factor: 3.490

7.  Gene replacement with linear DNA fragments in wild-type Escherichia coli: enhancement by Chi sites.

Authors:  P Dabert; G R Smith
Journal:  Genetics       Date:  1997-04       Impact factor: 4.562

8.  A broad-host-range in vivo pop-out and amplification system for generating large quantities of 50- to 100-kb genomic fragments for direct DNA sequencing.

Authors:  J Wild; Z Hradecná; G Pósfai; W Szybalski
Journal:  Gene       Date:  1996-11-07       Impact factor: 3.688

9.  A new logic for DNA engineering using recombination in Escherichia coli.

Authors:  Y Zhang; F Buchholz; J P Muyrers; A F Stewart
Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330

10.  Gene integration in the Escherichia coli chromosome mediated by Tn21 integrase (Int21).

Authors:  M V Francia; J M García Lobo
Journal:  J Bacteriol       Date:  1996-02       Impact factor: 3.490

View more
  6 in total

1.  What history tells us XL. The success story of the expression 'genome editing'.

Authors:  Michel Morange
Journal:  J Biosci       Date:  2016-03       Impact factor: 1.826

Review 2.  Understanding the art of producing protein and nonprotein molecules in Escherichia coli.

Authors:  P Balbás
Journal:  Mol Biotechnol       Date:  2001-11       Impact factor: 2.695

3.  Developing an extended genomic engineering approach based on recombineering to knock-in heterologous genes to Escherichia coli genome.

Authors:  Karan Sukhija; Michael Pyne; Saad Ali; Valerie Orr; Daryoush Abedi; Murray Moo-Young; C Perry Chou
Journal:  Mol Biotechnol       Date:  2012-06       Impact factor: 2.695

Review 4.  Application of the bacteriophage Mu-driven system for the integration/amplification of target genes in the chromosomes of engineered Gram-negative bacteria--mini review.

Authors:  Valerii Z Akhverdyan; Evgueni R Gak; Irina L Tokmakova; Nataliya V Stoynova; Yurgis A V Yomantas; Sergey V Mashko
Journal:  Appl Microbiol Biotechnol       Date:  2011-06-23       Impact factor: 4.813

Review 5.  Current state and recent advances in biopharmaceutical production in Escherichia coli, yeasts and mammalian cells.

Authors:  Aleš Berlec; Borut Strukelj
Journal:  J Ind Microbiol Biotechnol       Date:  2013-02-06       Impact factor: 3.346

6.  Long-Term Stable and Tightly Controlled Expression of Recombinant Proteins in Antibiotics-Free Conditions.

Authors:  Soo-Jin Yeom; Dae-Hee Lee; Yu Jung Kim; Jeongmin Lee; Kil Koang Kwon; Gui Hwan Han; Haseong Kim; Hak-Sung Kim; Seung-Goo Lee
Journal:  PLoS One       Date:  2016-12-01       Impact factor: 3.240

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.