Literature DB >> 11677621

The differential killing of genes by inversions in prokaryotic genomes.

P Mackiewicz1, D Mackiewicz, A Gierlik, M Kowalczuk, A Nowicka, M Dudkiewicz, M R Dudek, S Cebrat.   

Abstract

We have elaborated a method which has allowed us to estimate the direction of translocation of orthologs which have changed, during the phylogeny, their positions on chromosome in respect to the leading or lagging role of DNA strands. We have shown that the relative number of translocations which have switched positions of genes from the leading to the lagging DNA strand is lower than the number of translocations which have transferred genes from the lagging strand to the leading strand of prokaryotic genomes. This paradox could be explained by assuming that the stronger mutation pressure and selection after inversion preferentially eliminate genes transferred from the leading to the lagging DNA strand.

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Year:  2001        PMID: 11677621     DOI: 10.1007/s002390010248

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  8 in total

1.  Associations between inverted repeats and the structural evolution of bacterial genomes.

Authors:  Guillaume Achaz; Eric Coissac; Pierre Netter; Eduardo P C Rocha
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

2.  Asymmetric directional mutation pressures in bacteria.

Authors:  Jean R Lobry; Noboru Sueoka
Journal:  Genome Biol       Date:  2002-09-26       Impact factor: 13.583

3.  High correlation between the turnover of nucleotides under mutational pressure and the DNA composition.

Authors:  M Kowalczuk; P Mackiewicz; D Mackiewicz; A Nowicka; M Dudkiewicz; M R Dudek; S Cebrat
Journal:  BMC Evol Biol       Date:  2001-12-17       Impact factor: 3.260

4.  Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes.

Authors:  Paweł Błażej; Błażej Miasojedow; Małgorzata Grabińska; Paweł Mackiewicz
Journal:  PLoS One       Date:  2015-06-29       Impact factor: 3.240

5.  Gene inversion potentiates bacterial evolvability and virulence.

Authors:  Christopher N Merrikh; Houra Merrikh
Journal:  Nat Commun       Date:  2018-11-07       Impact factor: 14.919

6.  Testing the adaptive hypothesis of lagging-strand encoding in bacterial genomes.

Authors:  Haoxuan Liu; Jianzhi Zhang
Journal:  Nat Commun       Date:  2022-05-12       Impact factor: 17.694

7.  Optimization of amino acid replacement costs by mutational pressure in bacterial genomes.

Authors:  Paweł Błażej; Dorota Mackiewicz; Małgorzata Grabińska; Małgorzata Wnętrzak; Paweł Mackiewicz
Journal:  Sci Rep       Date:  2017-04-21       Impact factor: 4.379

Review 8.  The roles of replication-transcription conflict in mutagenesis and evolution of genome organization.

Authors:  Jeremy W Schroeder; T Sabari Sankar; Jue D Wang; Lyle A Simmons
Journal:  PLoS Genet       Date:  2020-08-27       Impact factor: 5.917

  8 in total

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