Literature DB >> 11607062

Differences between pair and bulk hydrophobic interactions.

R H Wood1, P T Thompson.   

Abstract

It is now well known that the pair interaction between two hydrocarbon molecules in water has distinctly different properties from the bulk hydrophobic interaction familiar to the biochemist, which is modeled by the transfer of a hydrocarbon from aqueous solutions to pure liquid hydrocarbon. We consider experimental data for pair interactions, which have been fitted by a simple empirical potential function, and point out some of their properties. (i) Surface free energy and cosphere overlap models, of the type considered until now, cannot reproduce correctly both the pair and bulk hydrophobic interactions. (ii) Pair interactions though still attractive are strikingly weaker in aqueous solution than in the gas phase, in contrast to the usual view of hydrophobic interactions. (iii) For pair interactions in water, the solvent-separated configuration is less important than the contact configuration if the hydrocarbon has more than two carbon atoms.

Entities:  

Year:  1990        PMID: 11607062      PMCID: PMC53386          DOI: 10.1073/pnas.87.3.946

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  9 in total

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Authors:  C Chothia
Journal:  Nature       Date:  1975-03-27       Impact factor: 49.962

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Authors:  C Chothia
Journal:  J Mol Biol       Date:  1976-07-25       Impact factor: 5.469

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Authors:  H L Friedman; C V Krishnan; C Jolicoeur
Journal:  Ann N Y Acad Sci       Date:  1973-03-30       Impact factor: 5.691

5.  Hydrophobic bonding and accessible surface area in proteins.

Authors:  C Chothia
Journal:  Nature       Date:  1974-03-22       Impact factor: 49.962

6.  Solvation energy in protein folding and binding.

Authors:  D Eisenberg; A D McLachlan
Journal:  Nature       Date:  1986 Jan 16-22       Impact factor: 49.962

7.  The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions. Establishment of a hydrophobicity scale.

Authors:  Y Nozaki; C Tanford
Journal:  J Biol Chem       Date:  1971-04-10       Impact factor: 5.157

8.  Hydrophobicity of amino acid residues in globular proteins.

Authors:  G D Rose; A R Geselowitz; G J Lesser; R H Lee; M H Zehfus
Journal:  Science       Date:  1985-08-30       Impact factor: 47.728

9.  Empirical correlation between hydrophobic free energy and aqueous cavity surface area.

Authors:  J A Reynolds; D B Gilbert; C Tanford
Journal:  Proc Natl Acad Sci U S A       Date:  1974-08       Impact factor: 11.205

  9 in total
  8 in total

1.  Interatomic potentials and solvation parameters from protein engineering data for buried residues.

Authors:  Andrei L Lomize; Mikhail Y Reibarkh; Irina D Pogozheva
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

2.  Geometric measures of large biomolecules: surface, volume, and pockets.

Authors:  Paul Mach; Patrice Koehl
Journal:  J Comput Chem       Date:  2011-08-08       Impact factor: 3.376

3.  A desolvation barrier to hydrophobic cluster formation may contribute to the rate-limiting step in protein folding.

Authors:  J A Rank; D Baker
Journal:  Protein Sci       Date:  1997-02       Impact factor: 6.725

4.  Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins.

Authors:  Suman Das; Yi-Hsuan Lin; Robert M Vernon; Julie D Forman-Kay; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

5.  Hydrophobic interaction and hydrogen-bond network for a methane pair in liquid water.

Authors:  Je-Luen Li; Roberto Car; Chao Tang; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-13       Impact factor: 11.205

6.  Residue solvent accessibilities in the unfolded polypeptide chain.

Authors:  P Zielenkiewicz; W Saenger
Journal:  Biophys J       Date:  1992-12       Impact factor: 4.033

7.  Contribution of the hydrophobic effect to protein stability: analysis based on simulations of the Ile-96----Ala mutation in barnase.

Authors:  M Prevost; S J Wodak; B Tidor; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1991-12-01       Impact factor: 11.205

8.  Evidence of Many-Body Interactions in the Virial Coefficients of Polyelectrolyte Gels.

Authors:  Ferenc Horkay; Jack F Douglas
Journal:  Gels       Date:  2022-02-04
  8 in total

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