Literature DB >> 11592132

Investigating and Engineering Enzymes by Genetic Selection.

Sean V. Taylor1, Peter Kast, Donald Hilvert.   

Abstract

Natural enzymes have arisen over millions of years by the gradual process of Darwinian evolution. The fundamental steps of evolution-mutation, selection, and amplification-can also be exploited in the laboratory to create and characterize protein catalysts on a human timescale. In vivo genetic selection strategies enable the exhaustive analysis of protein libraries with 10(10) different members, and even larger ensembles can be studied with in vitro methods. Evolutionary approaches can consequently yield statistically meaningful insight into the complex and often subtle interactions that influence protein folding, structure, and catalytic mechanism. Such methods are also being used increasingly as an adjunct to design, thus providing access to novel proteins with tailored catalytic activities and selectivities.

Entities:  

Year:  2001        PMID: 11592132     DOI: 10.1002/1521-3773(20010917)40:18<3310::aid-anie3310>3.0.co;2-p

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  21 in total

1.  A self-replicating ligase ribozyme.

Authors:  Natasha Paul; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-18       Impact factor: 11.205

2.  Directed evolution of ligand dependence: small-molecule-activated protein splicing.

Authors:  Allen R Buskirk; Yi-Ching Ong; Zev J Gartner; David R Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-09       Impact factor: 11.205

3.  DNA-templated organic synthesis and selection of a library of macrocycles.

Authors:  Zev J Gartner; Brian N Tse; Rozalina Grubina; Jeffrey B Doyon; Thomas M Snyder; David R Liu
Journal:  Science       Date:  2004-08-19       Impact factor: 47.728

4.  An enzymatic molten globule: efficient coupling of folding and catalysis.

Authors:  Katherina Vamvaca; Beat Vögeli; Peter Kast; Konstantin Pervushin; Donald Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-20       Impact factor: 11.205

5.  Controlling the enantioselectivity of enzymes by directed evolution: practical and theoretical ramifications.

Authors:  Manfred T Reetz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-12       Impact factor: 11.205

6.  Simultaneous optimization of enzyme activity and quaternary structure by directed evolution.

Authors:  Katherina Vamvaca; Maren Butz; Kai U Walter; Sean V Taylor; Donald Hilvert
Journal:  Protein Sci       Date:  2005-06-29       Impact factor: 6.725

7.  Metabolic engineering of a genetic selection system with tunable stringency.

Authors:  Andreas C Kleeb; Maryam Hansson Edalat; Marianne Gamper; Johannes Haugstetter; Lars Giger; Martin Neuenschwander; Peter Kast; Donald Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-22       Impact factor: 11.205

8.  A 21st century revisionist's view at a turning point in enzymology.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

9.  In vivo selection for the directed evolution of L-rhamnulose aldolase from L-rhamnulose-1-phosphate aldolase (RhaD).

Authors:  Masakazu Sugiyama; Zhangyong Hong; William A Greenberg; Chi-Huey Wong
Journal:  Bioorg Med Chem       Date:  2007-06-02       Impact factor: 3.641

10.  In vitro selection of a DNA-templated small-molecule library reveals a class of macrocyclic kinase inhibitors.

Authors:  Ralph E Kleiner; Christoph E Dumelin; Gerald C Tiu; Kaori Sakurai; David R Liu
Journal:  J Am Chem Soc       Date:  2010-08-25       Impact factor: 15.419

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