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Literature DB >> 11590103

CHROMA: consensus-based colouring of multiple alignments for publication.

Abstract

CHROMA annotates multiple protein sequence alignments by consensus to produce formatted and coloured text suitable for incorporation into other documents for publication. The package is designed to be flexible and reliable, and has a simple-to-use graphical user interface running under Microsoft Windows. Both the executables and source code for CHROMA running under Windows and Linux (portable command-line only) are freely available at http://www.lg.ndirect.co.uk/chroma. Software enquiries should be directed to CHROMA@lg.ndirect.co.uk.

Mesh：

Year: 2001 PMID： 11590103 DOI： 10.1093/bioinformatics/17.9.845

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

71 in total

1. Nob1p is required for cleavage of the 3' end of 18S rRNA.

Authors: Alessandro Fatica; Marlene Oeffinger; Mensur Dlakić; David Tollervey
Journal: Mol Cell Biol Date: 2003-03 Impact factor: 4.272

2. 3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs.

Authors: Steven P Bennett; Lin Lu; Douglas L Brutlag
Journal: Nucleic Acids Res Date: 2003-07-01 Impact factor: 16.971

3. ITS-2 and 18S rRNA gene phylogeny of Aplysinidae (Verongida, Demospongiae).

Authors: Susanne Schmitt; Ute Hentschel; Sven Zea; Thomas Dandekar; Matthias Wolf
Journal: J Mol Evol Date: 2005-03 Impact factor: 2.395

4. New genes from old: redeployment of dUTPase by herpesviruses.

Authors: Andrew J Davison; Nigel D Stow
Journal: J Virol Date: 2005-10 Impact factor: 5.103

5. Homozygous missense and nonsense mutations in BMPR1B cause acromesomelic chondrodysplasia-type Grebe.

Authors: Luitgard M Graul-Neumann; Alexandra Deichsel; Ulrike Wille; Naseebullah Kakar; Randi Koll; Christian Bassir; Jamil Ahmad; Valerie Cormier-Daire; Stefan Mundlos; Christian Kubisch; Guntram Borck; Eva Klopocki; Thomas D Mueller; Sandra C Doelken; Petra Seemann
Journal: Eur J Hum Genet Date: 2013-10-16 Impact factor: 4.246

6. Phylogenies of central element proteins reveal the dynamic evolutionary history of the mammalian synaptonemal complex: ancient and recent components.

Authors: Johanna Fraune; Céline Brochier-Armanet; Manfred Alsheimer; Ricardo Benavente
Journal: Genetics Date: 2013-09-11 Impact factor: 4.562

CHROMA: consensus-based colouring of multiple alignments for publication.

1. Nob1p is required for cleavage of the 3' end of 18S rRNA.

2. 3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs.

3. ITS-2 and 18S rRNA gene phylogeny of Aplysinidae (Verongida, Demospongiae).

4. New genes from old: redeployment of dUTPase by herpesviruses.

5. Homozygous missense and nonsense mutations in BMPR1B cause acromesomelic chondrodysplasia-type Grebe.

6. Phylogenies of central element proteins reveal the dynamic evolutionary history of the mammalian synaptonemal complex: ancient and recent components.

7. Hydra meiosis reveals unexpected conservation of structural synaptonemal complex proteins across metazoans.

8. Comparative evolutionary genomics of androgen-binding protein genes.

9. Anoctamin and transmembrane channel-like proteins are evolutionarily related.

10. Novel domains and orthologues of eukaryotic transcription elongation factors.