Literature DB >> 11568892

Unlocking the archive--gene expression in paraffin-embedded tissue.

F Lewis1, N J Maughan, V Smith, K Hillan, P Quirke.   

Abstract

The histopathology archive represents a vast, well-characterized source of specimens covering virtually every disease and is available for molecular biological investigation. The archive has in recent years become widely used for molecular genetic analysis and DNA can be routinely extracted from formalin-fixed, paraffin-embedded tissue. More recently, archival specimens have become a source of material for extensive analysis of mRNA expression utilizing DNA microarrays, real-time quantitative reverse transcriptase polymerase chain reaction (PCR), and in situ hybridization and amplification techniques. These techniques will enable a greater understanding of the changes that occur in gene function during every stage of the development of disease and will lead to better diagnosis, better evaluation of prognosis, and better treatment through targeted therapeutic regimes. Copyright 2001 John Wiley & Sons, Ltd.

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Year:  2001        PMID: 11568892     DOI: 10.1002/1096-9896(200109)195:1<66::AID-PATH921>3.0.CO;2-F

Source DB:  PubMed          Journal:  J Pathol        ISSN: 0022-3417            Impact factor:   7.996


  91 in total

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2.  DNA amplification method tolerant to sample degradation.

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3.  Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays.

Authors:  Marina Bibikova; Dimitri Talantov; Eugene Chudin; Joanne M Yeakley; Jing Chen; Dennis Doucet; Eliza Wickham; David Atkins; David Barker; Mark Chee; Yixin Wang; Jian-Bing Fan
Journal:  Am J Pathol       Date:  2004-11       Impact factor: 4.307

Review 4.  In situ hybridization in the pathology laboratory: general principles, automation, and emerging research applications for tissue-based studies of gene expression.

Authors:  David G Hicks; Gabe Longoria; James Pettay; Tom Grogan; Shannon Tarr; Raymond Tubbs
Journal:  J Mol Histol       Date:  2004-08       Impact factor: 2.611

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6.  Mechanisms of laser-induced dissection and transport of histologic specimens.

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7.  cDNA hybrid capture improves transcriptome analysis on low-input and archived samples.

Authors:  Christopher R Cabanski; Vincent Magrini; Malachi Griffith; Obi L Griffith; Sean McGrath; Jin Zhang; Jason Walker; Amy Ly; Ryan Demeter; Robert S Fulton; Winnie W Pong; David H Gutmann; Ramaswamy Govindan; Elaine R Mardis; Christopher A Maher
Journal:  J Mol Diagn       Date:  2014-05-09       Impact factor: 5.568

8.  Detection of Candida albicans mRNA from formalin-fixed, paraffin-embedded mouse tissues by nested reverse transcription-PCR.

Authors:  David A Schofield; Caroline Westwater; Emily E Paulling; Peter J Nicholas; Edward Balish
Journal:  J Clin Microbiol       Date:  2003-02       Impact factor: 5.948

9.  KRAS mutation analysis on low percentage of colon cancer cells: the importance of quality assurance.

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Journal:  Virchows Arch       Date:  2012-12-15       Impact factor: 4.064

10.  miRNA expressions in rectal cancer as predictors of response to neoadjuvant chemoradiation therapy.

Authors:  Elrasheid A H Kheirelseid; Nicola Miller; Kah Hoong Chang; Catherine Curran; Emer Hennessey; Margaret Sheehan; John Newell; Christophe Lemetre; Graham Balls; Michael J Kerin
Journal:  Int J Colorectal Dis       Date:  2012-08-18       Impact factor: 2.571

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