Literature DB >> 11567160

Solution solution: using NMR models for molecular replacement.

Y W Chen1.   

Abstract

NMR structures can serve as a good source of search models in crystal structure determination by molecular replacement. However, owing to the inherent problems of NMR models, this procedure is not always straightforward. Here, an updated overview is presented with particular emphasis on the preparation of NMR search models and the latest trends in methodology. An experimental protocol developed recently is described and results on its use in solving a new structure as well as its test against a difficult published case are presented.

Mesh:

Substances:

Year:  2001        PMID: 11567160     DOI: 10.1107/s0907444901010824

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  8 in total

1.  Crystallization and preliminary X-ray crystallographic analysis of the Sulfolobus solfataricus nucleotide-exchange factor 1beta.

Authors:  Alessia Ruggiero; Mariorosario Masullo; Paolo Arcari; Gennaro Raimo; Luigi Vitagliano; Adriana Zagari
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-10-25

2.  A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs).

Authors:  Christiane Ehrt; Tobias Brinkjost; Oliver Koch
Journal:  PLoS Comput Biol       Date:  2018-11-08       Impact factor: 4.475

3.  Improved technologies now routinely provide protein NMR structures useful for molecular replacement.

Authors:  Binchen Mao; Rongjin Guan; Gaetano T Montelione
Journal:  Structure       Date:  2011-06-08       Impact factor: 5.006

4.  Crystal structure of a human MUC16 SEA domain reveals insight into the nature of the CA125 tumor marker.

Authors:  Brandy White; Michelle Patterson; Saloni Karnwal; Cory L Brooks
Journal:  Proteins       Date:  2022-01-25

5.  Expression, purification, crystallization and preliminary X-ray crystallographic analysis of a resuscitation-promoting factor from Mycobacterium tuberculosis.

Authors:  Alessia Ruggiero; Barbara Tizzano; Arie Geerlof; Emilia Pedone; Carlo Pedone; Matthias Wilmanns; Rita Berisio
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-09-19

6.  Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study.

Authors:  Theresa A Ramelot; Srivatsan Raman; Alexandre P Kuzin; Rong Xiao; Li-Chung Ma; Thomas B Acton; John F Hunt; Gaetano T Montelione; David Baker; Michael A Kennedy
Journal:  Proteins       Date:  2009-04

7.  The JCSG MR pipeline: optimized alignments, multiple models and parallel searches.

Authors:  Robert Schwarzenbacher; Adam Godzik; Lukasz Jaroszewski
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05

8.  AMoRe: classical and modern.

Authors:  Stefano Trapani; Jorge Navaza
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.