Literature DB >> 11551393

mROC: a computer program for combining tumour markers in predicting disease states.

A Kramar1, D Faraggi, A Fortuné, B Reiser.   

Abstract

Receiver operating characteristic (ROC) curves are limited when several diagnostic tests are available, mainly due to the problems of multiplicity and inter-relationships between the different tests. The program presented in this paper uses the generalised ROC criteria, as well as its confidence interval, obtained from the non-central F distribution, as a possible solution to this problem. This criterion corresponds to the best linear combination of the test for which the area under the ROC curve is maximal. Quantified marker values are assumed to follow a multivariate normal distribution but not necessarily with equal variances for two populations. Other options include Box-Cox variable transformations, QQ-plots, interactive graphics associated with changes in sensitivity and specificity as a function of the cut-off. We provide an example to illustrate the usefulness of data transformation and of how linear combination of markers can significantly improve discriminative power. This finding highlights potential difficulties with methods that reject individual markers based on univariate analyses.

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Year:  2001        PMID: 11551393     DOI: 10.1016/s0169-2607(00)00129-2

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  12 in total

1.  Youden Index and the optimal threshold for markers with mass at zero.

Authors:  Enrique F Schisterman; David Faraggi; Benjamin Reiser; Jessica Hu
Journal:  Stat Med       Date:  2008-01-30       Impact factor: 2.373

2.  In vitro screening for drug-induced depression and/or suicidal adverse effects: a new toxicogenomic assay based on CE-SSCP analysis of HTR2C mRNA editing in SH-SY5Y cells.

Authors:  Laurent Cavarec; Laurent Vincent; Claudia Le Borgne; Camille Plusquellec; Nathalie Ollivier; Priscilla Normandie-Levi; Frédéric Allemand; Nicolas Salvetat; Eve Mathieu-Dupas; Franck Molina; Dinah Weissmann; Jean-François Pujol
Journal:  Neurotox Res       Date:  2012-04-13       Impact factor: 3.911

3.  Pemphigus vulgaris antigen mRNA quantification for the staging of sentinel lymph nodes in head and neck cancer.

Authors:  J Solassol; V Burcia; V Costes; J Lacombe; A Mange; E Barbotte; D de Verbizier; C Cartier; M Makeieff; L Crampette; N Boulle; T Maudelonde; B Guerrier; R Garrel
Journal:  Br J Cancer       Date:  2009-12-08       Impact factor: 7.640

4.  Ovine serum biomarkers of early and late phase scrapie.

Authors:  Isabelle Batxelli-Molina; Nicolas Salvetat; Olivier Andréoletti; Luc Guerrier; Guillaume Vicat; Franck Molina; Chantal Mourton-Gilles
Journal:  BMC Vet Res       Date:  2010-11-02       Impact factor: 2.741

5.  Plasma chromogranin A or urine fractionated metanephrines follow-up testing improves the diagnostic accuracy of plasma fractionated metanephrines for pheochromocytoma.

Authors:  Alicia Algeciras-Schimnich; Carol M Preissner; William F Young; Ravinder J Singh; Stefan K G Grebe
Journal:  J Clin Endocrinol Metab       Date:  2007-10-16       Impact factor: 5.958

6.  Combined determination of plasma MMP2, MMP9, and TIMP1 improves the non-invasive detection of transitional cell carcinoma of the bladder.

Authors:  Andrea Staack; Steffen Badendieck; Dietmar Schnorr; Stefan A Loening; Klaus Jung
Journal:  BMC Urol       Date:  2006-08-10       Impact factor: 2.264

7.  CombiROC: an interactive web tool for selecting accurate marker combinations of omics data.

Authors:  Saveria Mazzara; Riccardo L Rossi; Renata Grifantini; Simone Donizetti; Sergio Abrignani; Mauro Bombaci
Journal:  Sci Rep       Date:  2017-03-30       Impact factor: 4.379

8.  Brain region-specific alterations of RNA editing in PDE8A mRNA in suicide decedents.

Authors:  Fabrice Chimienti; Laurent Cavarec; Laurent Vincent; Nicolas Salvetat; Victoria Arango; Mark D Underwood; J John Mann; Jean-François Pujol; Dinah Weissmann
Journal:  Transl Psychiatry       Date:  2019-02-15       Impact factor: 6.222

9.  Cerebrospinal Aβ11-x and 17-x levels as indicators of mild cognitive impairment and patients' stratification in Alzheimer's disease.

Authors:  J-D Abraham; S Promé; N Salvetat; L Rubrecht; S Cobo; E du Paty; P Galéa; E Mathieu-Dupas; S Ranaldi; C Caillava; G-A Crémer; F Rieunier; P Robert; F Molina; D Laune; F Checler; J Fareh
Journal:  Transl Psychiatry       Date:  2013-07-16       Impact factor: 6.222

10.  Radiation-induced CD8 T-lymphocyte Apoptosis as a Predictor of Breast Fibrosis After Radiotherapy: Results of the Prospective Multicenter French Trial.

Authors:  David Azria; Olivier Riou; Florence Castan; Tan Dat Nguyen; Karine Peignaux; Claire Lemanski; Jean-Léon Lagrange; Youlia Kirova; Eric Lartigau; Yazid Belkacemi; Céline Bourgier; Sofia Rivera; Georges Noël; Sébastien Clippe; Françoise Mornex; Christophe Hennequin; Andrew Kramar; Sophie Gourgou; André Pèlegrin; Pascal Fenoglietto; Esat Mahmut Ozsahin
Journal:  EBioMedicine       Date:  2015-10-25       Impact factor: 8.143

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