Literature DB >> 11543595

Molecular dynamics of a water-lipid bilayer interface.

M A Wilson1, A Pohorille.   

Abstract

We present results of molecular dynamics simulations of a glycerol 1-monooleate bilayer in water. The total length of analyzed trajectories is 5 ns. The calculated width of the bilayer agrees well with the experimentally measured value. The interior of the membrane is in a highly disordered fluid state. Atomic density profiles, orientational and conformational distribution functions, and order parameters indicate that disorder increases toward the center of the bilayer. Analysis of out-of-plane thermal fluctuations of the bilayer surfaces occurring at the time scale of the present calculations reveals that the distribution of modes agrees with predictions of the capillary wave model. Fluctuations of both bilayer surfaces are uncorrelated, yielding Gaussian distribution of instantaneous widths of the membrane. Fluctuations of the width produce transient thinning defects in the bilayer which occasionally span almost half of the membrane. The leading mechanism of these fluctuations is the orientational and conformational motion of head groups rather than vertical motion of the whole molecules. Water considerably penetrates the head group region of the bilayer but not its hydrocarbon core. The total net excess dipole moment of the interfacial water points toward the aqueous phase, but the water polarization profile is non-monotonic. Both water and head groups significantly contribute to the surface potential across the interface. The calculated sign of the surface potential is in agreement with that from experimental measurements, but the value is markedly overestimated. The structural and electrical properties of the water-bilayer system are discussed in relation to membrane functions, in particular transport of ions and nonelectrolytes across membranes.

Entities:  

Keywords:  NASA Center ARC; NASA Discipline Exobiology

Mesh:

Substances:

Year:  1994        PMID: 11543595     DOI: 10.1021/ja00083a038

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  Molecular dynamics studies of simple membrane-water interfaces: structure and functions in the beginnings of cellular life.

Authors:  A Pohorille; M A Wilson
Journal:  Orig Life Evol Biosph       Date:  1995-06       Impact factor: 1.950

2.  Molecular dynamics simulation of spontaneous membrane fusion during a cubic-hexagonal phase transition.

Authors:  Siewert-Jan Marrink; D Peter Tieleman
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

3.  Ion transport through membrane-spanning nanopores studied by molecular dynamics simulations and continuum electrostatics calculations.

Authors:  Christine Peter; Gerhard Hummer
Journal:  Biophys J       Date:  2005-07-08       Impact factor: 4.033

4.  Interactions of a charged nanoparticle with a lipid membrane: implications for gene delivery.

Authors:  Christina L Ting; Zhen-Gang Wang
Journal:  Biophys J       Date:  2011-03-02       Impact factor: 4.033

5.  Electrochemical measurement of lateral diffusion coefficients of ubiquinones and plastoquinones of various isoprenoid chain lengths incorporated in model bilayers.

Authors:  D Marchal; W Boireau; J M Laval; J Moiroux; C Bourdillon
Journal:  Biophys J       Date:  1998-04       Impact factor: 4.033

6.  Molecular dynamics generation of nonarbitrary membrane models reveals lipid orientational correlations.

Authors:  Y Takaoka; M Pasenkiewicz-Gierula; H Miyagawa; K Kitamura; Y Tamura; A Kusumi
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

7.  Transmembrane helix structure, dynamics, and interactions: multi-nanosecond molecular dynamics simulations.

Authors:  L Shen; D Bassolino; T Stouch
Journal:  Biophys J       Date:  1997-07       Impact factor: 4.033

8.  Phase-transfer energetics of small-molecule alcohols across the water-hexane interface: molecular dynamics simulations using charge equilibration models.

Authors:  Brad A Bauer; Yang Zhong; David J Meninger; Joseph E Davis; Sandeep Patel
Journal:  J Mol Graph Model       Date:  2010-10-01       Impact factor: 2.518

9.  Calculations of the electrostatic potential adjacent to model phospholipid bilayers.

Authors:  R M Peitzsch; M Eisenberg; K A Sharp; S McLaughlin
Journal:  Biophys J       Date:  1995-03       Impact factor: 4.033

10.  Molecular dynamics investigation of bond ordering of unsaturated lipids in monolayers.

Authors:  A L Rabinovich; P O Ripatti; N K Balabaev
Journal:  J Biol Phys       Date:  1999-06       Impact factor: 1.365

  10 in total

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