Literature DB >> 11536672

Molecular dynamics studies of simple membrane-water interfaces: structure and functions in the beginnings of cellular life.

A Pohorille1, M A Wilson.   

Abstract

Molecular dynamics computer simulations of the structure and functions of a simple membrane are performed in order to examine whether membranes provide an environment capable of promoting protobiological evolution. Our model membrane is composed of glycerol 1-monooleate. It is found that the bilayer surface fluctuates in time and space, occasionally creating thinning defects in the membrane. These defects are essential for passive transport of simple ions across membranes because they reduce the Born barrier to this process by approximately 40%. Negative ions are transferred across the bilayer more readily than positive ions due to favorable interactions with the electric field at the membrane-water interface. Passive transport of neutral molecules is, in general, more complex than predicted by the solubility-diffusion model. In particular, molecules which exhibit sufficient hydrophilicity and lipophilicity concentrate near membrane surfaces and experience "interfacial resistance" to transport. The membrane-water interface forms an environment suitable for heterogeneous catalysis. Several possible mechanisms leading to an increase of reaction rates at the interface are discussed. We conclude that vesicles have many properties that make them very good candidates for earliest protocells. Some potentially fruitful directions of experimental and theoretical research on this subject are proposed.

Entities:  

Keywords:  NASA Center ARC; NASA Discipline Exobiology; NASA Discipline Number 52-20; NASA Program Exobiology

Mesh:

Substances:

Year:  1995        PMID: 11536672     DOI: 10.1007/bf01581571

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  31 in total

1.  Molecular dynamics of phenol at the liquid-vapor interface of water.

Authors:  A Pohorille; I Benjamin
Journal:  J Chem Phys       Date:  1991-04-15       Impact factor: 3.488

Review 2.  Peptides with affinity for membranes.

Authors:  E T Kaiser; F J Kézdy
Journal:  Annu Rev Biophys Biophys Chem       Date:  1987

3.  Autocatalytic sets of proteins.

Authors:  S A Kauffman
Journal:  J Theor Biol       Date:  1986-03-07       Impact factor: 2.691

4.  The membrane dipole potential in a total membrane potential model. Applications to hydrophobic ion interactions with membranes.

Authors:  R F Flewelling; W L Hubbell
Journal:  Biophys J       Date:  1986-02       Impact factor: 4.033

5.  Lateral compressibility of lipid mono- and bilayers. Theory of membrane permeability.

Authors:  J F Nagle; H L Scott
Journal:  Biochim Biophys Acta       Date:  1978-11-02

6.  Diffusion of Mn2+ ions into liposomes mediated by phosphatidate and monitored by the activation of an encapsulated enzymatic system.

Authors:  I Baeza; M Ibáñez; J C Santiago; C Argüello; C Wong; J Oró
Journal:  J Mol Evol       Date:  1990-12       Impact factor: 2.395

7.  Formation of "solvent-free" black lipid bilayer membranes from glyceryl monooleate dispersed in squalene.

Authors:  S H White
Journal:  Biophys J       Date:  1978-09       Impact factor: 4.033

8.  Permeability of lipid bilayers to amino acids and phosphate.

Authors:  A C Chakrabarti; D W Deamer
Journal:  Biochim Biophys Acta       Date:  1992-11-09

9.  Design and synthesis of basic peptides having amphipathic beta-structure and their interaction with phospholipid membranes.

Authors:  S Ono; S Lee; H Mihara; H Aoyagi; T Kato; N Yamasaki
Journal:  Biochim Biophys Acta       Date:  1990-02-28
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  12 in total

1.  Compositional genomes: prebiotic information transfer in mutually catalytic noncovalent assemblies.

Authors:  D Segré; D Ben-Eli; D Lancet
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Prospects of a computational origin of life endeavor.

Authors:  Barak Shenhav; Doron Lancet
Journal:  Orig Life Evol Biosph       Date:  2004-02       Impact factor: 1.950

3.  The sugar model: catalytic flow reactor dynamics of pyruvaldehyde synthesis from triose catalyzed by poly-l-lysine contained in a dialyzer.

Authors:  A L Weber
Journal:  Orig Life Evol Biosph       Date:  2001-06       Impact factor: 1.950

4.  Energy transduction inside of amphiphilic vesicles: encapsulation of photochemically active semiconducting particles.

Authors:  David P Summers; Juan Noveron; Ranor C B Basa
Journal:  Orig Life Evol Biosph       Date:  2009-03-04       Impact factor: 1.950

5.  Towards co-evolution of membrane proteins and metabolism.

Authors:  Michael A Wilson; Chenyu Wei; Andrew Pohorille
Journal:  Orig Life Evol Biosph       Date:  2015-01-23       Impact factor: 1.950

Review 6.  The first living systems: a bioenergetic perspective.

Authors:  D W Deamer
Journal:  Microbiol Mol Biol Rev       Date:  1997-06       Impact factor: 11.056

7.  Computer simulation of ion channel gating: the M(2) channel of influenza A virus in a lipid bilayer.

Authors:  K J Schweighofer; A Pohorille
Journal:  Biophys J       Date:  2000-01       Impact factor: 4.033

8.  Molecular dynamics generation of nonarbitrary membrane models reveals lipid orientational correlations.

Authors:  Y Takaoka; M Pasenkiewicz-Gierula; H Miyagawa; K Kitamura; Y Tamura; A Kusumi
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

9.  Growth of organic microspherules in sugar-ammonia reactions.

Authors:  Arthur L Weber
Journal:  Orig Life Evol Biosph       Date:  2005-12       Impact factor: 1.950

10.  The sugar model: catalysis by amines and amino acid products.

Authors:  A L Weber
Journal:  Orig Life Evol Biosph       Date:  2001 Feb-Apr       Impact factor: 1.950

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