Literature DB >> 11526210

Multiwavelength anomalous diffraction analysis at the M absorption edges of uranium.

Y Liu1, C M Ogata, W A Hendrickson.   

Abstract

The multiwavelength anomalous diffraction (MAD) method for phase evaluation is now widely used in macromolecular crystallography. Successful MAD structure determinations have been carried out at the K or L absorption edges of a variety of elements. In this study, we investigate the anomalous scattering properties of uranium at its M(IV) (3.326 A) and M(V) (3.490 A) edge. Fluorescence spectra showed remarkably strong anomalous scattering at these edges (f' = -70e, f" = 80e at the M(IV) edge and f' = -90e, f" = 105e at the M(V) edge), many times higher than from any anomalous scatterers used previously for MAD phasing. However, the large scattering angles and high absorption at the low energies of these edges present some difficulties not found in typical crystallographic studies. We conducted test experiments at the M(IV) edge with crystals of porcine elastase derivatized with uranyl nitrate. A four-wavelength MAD data set complete to 3.2-A Bragg spacings was collected from a single small frozen crystal. Analysis of the data yielded satisfactory phase information (average difference of (0)phi(T) - (0)phi(A) for replicated determinations is 32 degrees ) and produced an interpretable electron-density map. Our results demonstrate that it is practical to measure macromolecular diffraction data at these edges with current instrumentation and that phase information of good accuracy can be extracted from such experiments. We show that such experiments have potential for the phasing of very large macromolecular assemblages.

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Year:  2001        PMID: 11526210      PMCID: PMC58520          DOI: 10.1073/pnas.191003998

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  16 in total

1.  Selenium-based MAD phasing: setting the sites on larger structures.

Authors:  A M Deacon; S E Ealick
Journal:  Structure       Date:  1999-07-15       Impact factor: 5.006

2.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

3.  Magnetic x-ray-scattering study of uranium arsenide.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1990-10-01

4.  Multiple-scattering approach to the M-edge x-ray-absorption spectra of UO2 and UCl4.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1989-03-15

5.  Delocalized versus localized unoccupied 5f states and the uranium site structure in uranium oxides and glasses probed by x-ray-absorption near-edge structure.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1986-11-15

6.  Three-dimensional Fourier synthesis of tosyl-elastase at 3.5 å resolution.

Authors:  H C Watson; D M Shotton; J M Cox; H Muirhead
Journal:  Nature       Date:  1970-02-28       Impact factor: 49.962

7.  Structure of restriction endonuclease bamhi phased at 1.95 A resolution by MAD analysis.

Authors:  M Newman; T Strzelecka; L F Dorner; I Schildkraut; A K Aggarwal
Journal:  Structure       Date:  1994-05-15       Impact factor: 5.006

8.  White lines in L-edge x-ray absorption spectra and their implications for anomalous diffraction studies of biological materials.

Authors:  R C Lye; J C Phillips; D Kaplan; S Doniach; K O Hodgson
Journal:  Proc Natl Acad Sci U S A       Date:  1980-10       Impact factor: 11.205

9.  Structure of native porcine pancreatic elastase at 1.65 A resolutions.

Authors:  E Meyer; G Cole; R Radhakrishnan; O Epp
Journal:  Acta Crystallogr B       Date:  1988-02-01

10.  Characterization and preliminary attempts for derivatization of crystals of large ribosomal subunits from Haloarcula marismortui diffracting to 3 A resolution.

Authors:  K von Böhlen; I Makowski; H A Hansen; H Bartels; Z Berkovitch-Yellin; A Zaytzev-Bashan; S Meyer; C Paulke; F Franceschi; A Yonath
Journal:  J Mol Biol       Date:  1991-11-05       Impact factor: 5.469

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Authors:  Chantal Abergel; Bruno Coutard; Deborah Byrne; Sabine Chenivesse; Jean-Baptiste Claude; Céline Deregnaucourt; Thierry Fricaux; Celine Gianesini-Boutreux; Sandra Jeudy; Régine Lebrun; Caroline Maza; Cédric Notredame; Olivier Poirot; Karsten Suhre; Majorie Varagnol; Jean-Michel Claverie
Journal:  J Struct Funct Genomics       Date:  2003

Review 2.  Anomalous diffraction in crystallographic phase evaluation.

Authors:  Wayne A Hendrickson
Journal:  Q Rev Biophys       Date:  2014-02       Impact factor: 5.318

Review 3.  Contemporary Use of Anomalous Diffraction in Biomolecular Structure Analysis.

Authors:  Qun Liu; Wayne A Hendrickson
Journal:  Methods Mol Biol       Date:  2017

4.  Robust structural analysis of native biological macromolecules from multi-crystal anomalous diffraction data.

Authors:  Qun Liu; Qinglian Liu; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-13

Review 5.  Synchrotron radiation macromolecular crystallography: science and spin-offs.

Authors:  John R Helliwell; Edward P Mitchell
Journal:  IUCrJ       Date:  2015-02-03       Impact factor: 4.769

6.  Data collection with a tailored X-ray beam size at 2.69 Å wavelength (4.6 keV): sulfur SAD phasing of Cdc23(Nterm).

Authors:  Michele Cianci; Matthew R Groves; David Barford; Thomas R Schneider
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

7.  In-vacuum long-wavelength macromolecular crystallography.

Authors:  Armin Wagner; Ramona Duman; Keith Henderson; Vitaliy Mykhaylyk
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

8.  P13, the EMBL macromolecular crystallography beamline at the low-emittance PETRA III ring for high- and low-energy phasing with variable beam focusing.

Authors:  Michele Cianci; Gleb Bourenkov; Guillaume Pompidor; Ivars Karpics; Johanna Kallio; Isabel Bento; Manfred Roessle; Florent Cipriani; Stefan Fiedler; Thomas R Schneider
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

9.  In vacuo X-ray data collection from graphene-wrapped protein crystals.

Authors:  Anna J Warren; Adam D Crawshaw; Jose Trincao; Pierre Aller; Simon Alcock; Ioana Nistea; Paula S Salgado; Gwyndaf Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-09-26
  9 in total

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