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Literature DB >> 11526051

Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples.

D R Singleton¹, M A Furlong, S L Rathbun, W B Whitman.

Abstract

To determine the significance of differences between clonal libraries of environmental rRNA gene sequences, differences between homologous coverage curves, CX(D), and heterologous coverage curves, CXY(D), were calculated by a Cramér-von Mises-type statistic and compared by a Monte Carlo test procedure. This method successfully distinguished rRNA gene sequence libraries from soil and bioreactors and correctly failed to find differences between libraries of the same composition.

Entities: Species

Mesh：

Substances：
RNA, Ribosomal, 16S

Year: 2001 PMID： 11526051 PMCID： PMC93175 DOI： 10.1128/AEM.67.9.4374-4376.2001

Source DB: PubMed Journal: Appl Environ Microbiol ISSN： 0099-2240 Impact factor: 4.792

4 in total

1. Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning.

Authors: J Dunbar; S Takala; S M Barns; J A Davis; C R Kuske
Journal: Appl Environ Microbiol Date: 1999-04 Impact factor: 4.792

2. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures.

Authors: A E McCaig; L A Glover; J I Prosser
Journal: Appl Environ Microbiol Date: 1999-04 Impact factor: 4.792

Review 3. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis.

Authors: F von Wintzingerode; U B Göbel; E Stackebrandt
Journal: FEMS Microbiol Rev Date: 1997-11 Impact factor: 16.408

4. Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors.

Authors: P L Bond; P Hugenholtz; J Keller; L L Blackall
Journal: Appl Environ Microbiol Date: 1995-05 Impact factor: 4.792

4 in total

205 in total

1. Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus.

Authors: Michelle A Furlong; David R Singleton; David C Coleman; William B Whitman
Journal: Appl Environ Microbiol Date: 2002-03 Impact factor: 4.792

2. Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities.

Authors: Angela D Kent; Dan J Smith; Barbara J Benson; Eric W Triplett
Journal: Appl Environ Microbiol Date: 2003-11 Impact factor: 4.792

3. Dynamics of bacterial and fungal communities on decaying salt marsh grass.

Authors: Alison Buchan; Steven Y Newell; Melissa Butler; Erin J Biers; James T Hollibaugh; Mary Ann Moran
Journal: Appl Environ Microbiol Date: 2003-11 Impact factor: 4.792

4. Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment.

Authors: John P Bowman; Robert D McCuaig
Journal: Appl Environ Microbiol Date: 2003-05 Impact factor: 4.792

Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples.

1. Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning.

2. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures.

Review 3. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis.

4. Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors.

1. Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus.

2. Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities.

3. Dynamics of bacterial and fungal communities on decaying salt marsh grass.

4. Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment.

5. Molecular evidence for a uniform microbial community in sponges from different oceans.

Review 6. Phylogenetic approaches for describing and comparing the diversity of microbial communities.

7. Statistical approaches for estimating actinobacterial diversity in marine sediments.

8. Molecular analysis of carbon monoxide-oxidizing bacteria associated with recent Hawaiian volcanic deposits.

9. Integration of microbial ecology and statistics: a test to compare gene libraries.

10. Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters.