Literature DB >> 11509386

Complex homogeneous and heterogeneous fluorescence anisotropy decays: enhancing analysis accuracy.

Z Bajzer1, M C Moncrieffe, I Penzar, F G Prendergast.   

Abstract

In biological macromolecules, fluorophores often exhibit multiple depolarizing motions that require multiple lifetimes and rotational relaxation times to define fluorescence intensity and anisotropy decays. The related analysis of time-correlated single-photon counting data becomes uncertain due to the multitude of decay parameters and numerical sensitivity to deconvolution of the instrument response function (IRF) via discretization of integrals. By using simulations we show that improved discretizations based on quadratic and cubic local approximations of the IRF yield more accurate estimation of short rotational relaxation times and lifetimes than the commonly used Grinvald-Steinberg discretization, which in turn appears more reliable than two discretizations based on linear local approximations of the IRF. In addition, our simulation suggests that cubic approximation is the most advantageous in discriminating complex heterogeneous and homogeneous anisotropy decay. We show that among three different information criteria, the Akaike information criterion is best suited for detection of heterogeneity in rotational relaxation times. It is capable of detecting heterogeneity even when anisotropy decay appears homogeneous within statistical errors of estimation.

Mesh:

Year:  2001        PMID: 11509386      PMCID: PMC1301651          DOI: 10.1016/S0006-3495(01)75827-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Thermal stability of a flavoprotein assessed from associative analysis of polarized time-resolved fluorescence spectroscopy.

Authors:  A V Digris; V V Skakoun; E G Novikov; A van Hoek; A Claiborne; A J Visser
Journal:  Eur Biophys J       Date:  1999       Impact factor: 1.733

2.  Structure and dynamics of motilin. Time-resolved fluorescence of peptide hormone with single tyrosine residue.

Authors:  B M Backlund; A Gräslund
Journal:  Biophys Chem       Date:  1992-11       Impact factor: 2.352

3.  Structure-fluorescence correlations in a single tryptophan mutant of carp parvalbumin: solution structure, backbone and side-chain dynamics.

Authors:  M C Moncrieffe; N Juranic; M D Kemple; J D Potter; S Macura; F G Prendergast
Journal:  J Mol Biol       Date:  2000-03-17       Impact factor: 5.469

4.  Maximum likelihood analysis of fluorescence data.

Authors:  Z Bajzer; F G Prendergast
Journal:  Methods Enzymol       Date:  1992       Impact factor: 1.600

5.  Analysis of fluorescence anisotropy decays by a least square method.

Authors:  P Wahl
Journal:  Biophys Chem       Date:  1979-07       Impact factor: 2.352

6.  Analysis of fluorescence decay by the nonlinear least squares method.

Authors:  N Periasamy
Journal:  Biophys J       Date:  1988-11       Impact factor: 4.033

7.  Dynamics of biomolecules: assignment of local motions by fluorescence anisotropy decay.

Authors:  C N Bialik; B Wolf; E L Rachofsky; J B Ross; W R Laws
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

Review 8.  Molecular interactions and structure as analysed by fluorescence relaxation spectroscopy.

Authors:  R Rigler; M Ehrenberg
Journal:  Q Rev Biophys       Date:  1973-05       Impact factor: 5.318

9.  Dynamics of the peptide hormone motilin studied by time resolved fluorescence spectroscopy.

Authors:  B M Backlund; T Kulinski; R Rigler; A Gräslund
Journal:  Eur Biophys J       Date:  1995       Impact factor: 1.733

10.  Tryptophan dynamics of the FK506 binding protein: time-resolved fluorescence and simulations.

Authors:  N D Silva; F G Prendergast
Journal:  Biophys J       Date:  1996-03       Impact factor: 4.033

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  2 in total

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Authors:  Kevin L Neff; Chetan P Offord; Ariel J Caride; Emanuel E Strehler; Franklyn G Prendergast; Zeljko Bajzer
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

2.  Nanosecond-Timescale Dynamics and Conformational Heterogeneity in Human GCK Regulation and Disease.

Authors:  Shawn M Sternisha; A Carl Whittington; Juliana A Martinez Fiesco; Carol Porter; Malcolm M McCray; Timothy Logan; Cristina Olivieri; Gianluigi Veglia; Peter J Steinbach; Brian G Miller
Journal:  Biophys J       Date:  2020-01-14       Impact factor: 4.033

  2 in total

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