Literature DB >> 11504850

Translational selection on codon usage in Xenopus laevis.

H Musto1, S Cruveiller, G D'Onofrio, H Romero, G Bernardi.   

Abstract

A correspondence analysis of codon usage in Xenopus laevis revealed that the first axis is strongly correlated with the base composition at third codon positions. The second axis discriminates between putatively highly expressed genes and the other coding sequences, with expression levels being confirmed by the analysis of Expressed sequence tag frequencies. The comparison of codon usage of the sequences displaying the extreme values on the second axis indicates that several codons are statistically more frequent among the highly expressed (mainly housekeeping) genes. Translational selection appears, therefore, to influence synonymous codon usage in Xenopus.

Entities:  

Mesh：

Substances：

Year:  2001        PMID： 11504850     DOI： 10.1093/oxfordjournals.molbev.a003958

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN： 0737-4038            Impact factor:   16.240


  23 in total

1.  Global mRNA stability is not associated with levels of gene expression in Drosophila melanogaster but shows a negative correlation with codon bias.

Authors:  Hans K Stenøien; Wolfgang Stephan
Journal:  J Mol Evol       Date:  2005-07-21       Impact factor: 2.395

2.  Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region.

Authors:  Cara Carthel Burns; Jing Shaw; Ray Campagnoli; Jaume Jorba; Annelet Vincent; Jacqueline Quay; Olen Kew
Journal:  J Virol       Date:  2006-04       Impact factor: 5.103

3.  Measuring and detecting molecular adaptation in codon usage against nonsense errors during protein translation.

Authors:  Michael A Gilchrist; Premal Shah; Russell Zaretzki
Journal:  Genetics       Date:  2009-10-12       Impact factor: 4.562

4.  Interspecific and intragenic differences in codon usage bias among vertebrate myosin heavy-chain genes.

Authors:  Mikio C Aoi; Bryan C Rourke
Journal:  J Mol Evol       Date:  2011-09-14       Impact factor: 2.395

5.  Comparative studies on codon usage pattern of chloroplasts and their host nuclear genes in four plant species.

Authors:  Qingpo Liu; Qingzhong Xue
Journal:  J Genet       Date:  2005-04       Impact factor: 1.166

6.  Sequence Analysis of the Full-length cDNA and Protein Structure Homology Modeling of FABP2 from Paralichthys Olivaceus.

Authors:  Xiaowu Chen; Zhiyi Shi
Journal:  Bioinform Biol Insights       Date:  2009-06-04

7.  Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis A virus capsid.

Authors:  Lluís Aragonès; Susana Guix; Enric Ribes; Albert Bosch; Rosa M Pintó
Journal:  PLoS Pathog       Date:  2010-03-05       Impact factor: 6.823

8.  Analysis of Codon Usage Patterns in Toxic Dinoflagellate Alexandrium tamarense through Expressed Sequence Tag Data.

Authors:  Yi-Yuong Hsiao; Chorng-Horng Lin; Jong-Kang Liu; Tit-Yee Wong; Jimmy Kuo
Journal:  Comp Funct Genomics       Date:  2010-11-01

9.  Analysis of the codon use frequency of AMPK family genes from different species.

Authors:  Qin Zhang; Sheng Zhao; Hong Chen; Xiaolin Liu; Li Zhang; Fei Li
Journal:  Mol Biol Rep       Date:  2008-01-11       Impact factor: 2.316

10.  Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome.

Authors:  Mario dos Reis; Lorenz Wernisch; Renos Savva
Journal:  Nucleic Acids Res       Date:  2003-12-01       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.