Literature DB >> 114982

Comparison of the A-T rich regions and the Bacillus subtilis RNA polymerase binding sites in phage phi 29 DNA.

J M Sogo, P Rodeño, T Koller, E Viñuela, M Salas.   

Abstract

By using a modification of the BAC spreading method for mounting the DNA for electron microscopy, partial denaturation maps of protein-free phi 29 DNA and of phi 29 DNA containing protein p3 were obtained. In phi 29 p3-DNA1 the protein does not seem to influence the melting of the ends of the molecules. The comparison of the partial denaturation map and the B. subtilis RNA polymerase binding sites indicates that five of the seven early promoters (A1, A2, A3, B2 and C2) are located in A-T rich DNA regions whereas the other two early promoters (B1 and C1) are located in less A-T rich sites.

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Year:  1979        PMID： 114982      PMCID： PMC327999          DOI： 10.1093/nar/7.1.107

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  28 in total

1.  Genome-linked protein associated with the 5' termini of bacteriophage phi29 DNA.

Authors:  C O Yehle
Journal:  J Virol       Date:  1978-09       Impact factor: 5.103

2.  RNA polymerase binding sites and transcription map of the DNA of Bacillus subtilis phage phi29.

Authors:  J M Sogo; M R Inciarte; J Corral; E Viñuela; M Salas
Journal:  J Mol Biol       Date:  1979-02-05       Impact factor: 5.469

3.  Structure of single-stranded nucleic acids in the presence of ribosomal protein S1.

Authors:  J O Thomas; A Kolb; W Szer
Journal:  J Mol Biol       Date:  1978-08-05       Impact factor: 5.469

4.  Partial denaturation mapping of cloned histone DNA from the sea urchin Psammechinus miliaris.

Authors:  R Portmann; W Schaffner; M Birnstiel
Journal:  Nature       Date:  1976-11-04       Impact factor: 49.962

5.  A routine method for protein-free spreading of double- and single-stranded nucleic acid molecules.

Authors:  H J Vollenweider; J M Sogo; T Koller
Journal:  Proc Natl Acad Sci U S A       Date:  1975-01       Impact factor: 11.205

6.  Thermolabile transfecting DNA from temperature-sensitive mutant of phage phi29.

Authors:  S Yanofsky; F Kawamura; J Ito
Journal:  Nature       Date:  1976 Jan 1-8       Impact factor: 49.962

7.  Identification of the protein firmly bound to the ends of bacteriophage phi 29 DNA.

Authors:  N E Harding; J Ito; G S David
Journal:  Virology       Date:  1978-02       Impact factor: 3.616

8.  RNA polymerase binding sites in lambdaplac5 DNA.

Authors:  B B Jones; H Chan; S Rothstein; R D Wells; W S Reznikoff
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

9.  High resolution physical mapping of specific binding sites of Escherichia coli RNA polymerase on the DNA of bacteriophage T7 .

Authors:  T Koller; O Kübler; R Portmann; J M Sogo
Journal:  J Mol Biol       Date:  1978-03-25       Impact factor: 5.469

10.  Base-unpaired regions in supercoiled replicative form DNA of coliphage M13.

Authors:  S Dasgupta; D P Allison; C E Snyder; S Mitra
Journal:  J Biol Chem       Date:  1977-08-25       Impact factor: 5.157
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  7 in total

1.  Ribosomal gene clusters are uniquely proportioned between open and closed chromatin structures in both tomato leaf cells and exponentially growing suspension cultures.

Authors:  A Conconi; J M Sogo; C A Ryan
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

2.  DNA of the Streptomyces phage SH10: binding sites for Escherichia coli RNA polymerase and denaturation map.

Authors:  S Klaus; F Vogel; J Gautschi; M Stålhammar-Carlemalm; J Meyer
Journal:  Mol Gen Genet       Date:  1983

3.  Structural organization of the two main rDNA size classes of Ascaris lumbricoides.

Authors:  E Back; F Müller; H Tobler
Journal:  Nucleic Acids Res       Date:  1984-02-10       Impact factor: 16.971

4.  Structure of replicating DNA molecules of Bacillus subtilis bacteriophage phi 29.

Authors:  M R Inciarte; M Salas; J M Sogo
Journal:  J Virol       Date:  1980-04       Impact factor: 5.103

5.  Plasmid replication functions. VII. Electron microscopic localization of RNA polymerase binding sites in the replication control region of plasmid R6-5.

Authors:  R Lurz; H Danbara; B Rückert; K N Timmis
Journal:  Mol Gen Genet       Date:  1981

6.  In vitro transcription of the Bacillus subtilis phage phi 29 DNA by Bacillus subtilis and Escherichia coli RNA polymerases.

Authors:  J M Sogo; M Lozano; M Salas
Journal:  Nucleic Acids Res       Date:  1984-02-24       Impact factor: 16.971

7.  Nucleotide sequence at the termini of the DNA of Bacillus subtilis phage phi 29.

Authors:  C Escarmís; M Salas
Journal:  Proc Natl Acad Sci U S A       Date:  1981-03       Impact factor: 11.205
  7 in total

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