Literature DB >> 11497866

The future is noisy: the role of spatial fluctuations in genetic switching.

R Metzler1.   

Abstract

A genetic switch may be realized by a certain operator sector on the DNA strand from which either genetic code, to the left or to the right of this operator sector, can be transcribed and the corresponding information processed. This switch is controlled by messenger molecules, i.e., they determine to which side the switch is flipped. Recently, it has been realized that noise plays an elementary role in genetic switching, and the effect of number fluctuations of the messenger molecules have been explored. Here we argue that the assumption of well stirredness taken in the previous models may not be sufficient to characterize the influence of noise: spatial fluctuations play a non-negligible part in cellular genetic switching processes.

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Year:  2001        PMID: 11497866     DOI: 10.1103/PhysRevLett.87.068103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  12 in total

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2.  Diffusion of transcription factors can drastically enhance the noise in gene expression.

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Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

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4.  Exponential sensitivity of noise-driven switching in genetic networks.

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Journal:  Phys Biol       Date:  2008-06-16       Impact factor: 2.583

5.  Perspective: Stochastic algorithms for chemical kinetics.

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6.  Multiscale Modeling of Diffusion in a Crowded Environment.

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7.  Information capacity of genetic regulatory elements.

Authors:  Gasper Tkacik; Curtis G Callan; William Bialek
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-07-21

8.  Entropy loss in long-distance DNA looping.

Authors:  Andreas Hanke; Ralf Metzler
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

9.  Simulation of stochastic diffusion via first exit times.

Authors:  Per Lötstedt; Lina Meinecke
Journal:  J Comput Phys       Date:  2015-11-01       Impact factor: 3.553

10.  Stochastic reaction-diffusion processes with embedded lower-dimensional structures.

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Journal:  Bull Math Biol       Date:  2013-10-26       Impact factor: 1.758

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